[][] ath   AT5G08280 Gene
functional annotation
Function   hydroxymethylbilane synthase
GO BP
GO:0018160 [list] [network] peptidyl-pyrromethane cofactor linkage  (1 genes)  IEA  
GO:0006782 [list] [network] protoporphyrinogen IX biosynthetic process  (15 genes)  IEA  
GO:1900865 [list] [network] chloroplast RNA modification  (18 genes)  IMP  
GO:0006783 [list] [network] heme biosynthetic process  (24 genes)  IBA  
GO:0015995 [list] [network] chlorophyll biosynthetic process  (41 genes)  IEA TAS  
GO:0006779 [list] [network] porphyrin-containing compound biosynthetic process  (49 genes)  TAS  
GO:0042742 [list] [network] defense response to bacterium  (399 genes)  IEP  
GO CC
GO:0048046 [list] [network] apoplast  (443 genes)  IDA  
GO:0009941 [list] [network] chloroplast envelope  (666 genes)  IDA  
GO:0009570 [list] [network] chloroplast stroma  (750 genes)  IDA  
GO:0005886 [list] [network] plasma membrane  (3771 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5095 genes)  HDA IDA ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IBA  
GO MF
GO:0004418 [list] [network] hydroxymethylbilane synthase activity  (1 genes)  IBA IDA IMP  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath00860 [list] [network] Porphyrin and chlorophyll metabolism (53 genes)
Protein NP_196445.1 
BLAST NP_196445.1 
Orthologous [Ortholog page] LOC4328432 (osa)LOC11441634 (mtr)LOC100191140 (zma)LOC100284619 (zma)LOC100779132 (gma)LOC100810357 (gma)LOC100812733 (gma)LOC100852483 (vvi)LOC101257684 (sly)LOC103847145 (bra)LOC103850687 (bra)LOC103855770 (bra)
Subcellular
localization
wolf
chlo 8,  mito 2  (predict for NP_196445.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_196445.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin and chlorophyll metabolism 11
ath03010 Ribosome 3
Genes directly connected with HEMC on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
13.6 HEME2 Uroporphyrinogen decarboxylase [detail] 818644
12.3 LIN2 Coproporphyrinogen III oxidase [detail] 839489
11.8 EMB3143 YCF54 [detail] 835937
11.0 HEMB1 Aldolase superfamily protein [detail] 843310
10.8 HEME1 Uroporphyrinogen decarboxylase [detail] 820722
10.1 GSA2 glutamate-1-semialdehyde 2,1-aminomutase 2 [detail] 824034
8.8 PPOX Flavin containing amine oxidoreductase family [detail] 827991
8.4 GSA1 glutamate-1-semialdehyde-2,1-aminomutase [detail] 836476
Coexpressed
gene list
[Coexpressed gene list for HEMC]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
246033_at
246033_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
246033_at
246033_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
246033_at
246033_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 830724    
Refseq ID (protein) NP_196445.1 


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