[][] ath   AT5G09660 Gene
functional annotation
Function   peroxisomal NAD-malate dehydrogenase 2
GO BP
GO:0080093 [list] [network] regulation of photorespiration  (3 genes)  IMP  
GO:0031998 [list] [network] regulation of fatty acid beta-oxidation  (5 genes)  IGI IMP  
GO:0006097 [list] [network] glyoxylate cycle  (7 genes)  IEA  
GO:0006108 [list] [network] malate metabolic process  (17 genes)  IEA  
GO:0006099 [list] [network] tricarboxylic acid cycle  (54 genes)  IEA  
GO CC
GO:0005777 [list] [network] peroxisome  (325 genes)  IDA  
GO:0042579 [list] [network] microbody  (325 genes)  ISS  
GO:0048046 [list] [network] apoplast  (443 genes)  IDA  
GO:0009941 [list] [network] chloroplast envelope  (666 genes)  IDA  
GO:0005773 [list] [network] vacuole  (1133 genes)  IDA  
GO:0005886 [list] [network] plasma membrane  (3771 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5095 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  ISM  
GO MF
GO:0016615 [list] [network] malate dehydrogenase activity  (15 genes)  ISS  
KEGG ath00020 [list] [network] Citrate cycle (TCA cycle) (63 genes)
ath00270 [list] [network] Cysteine and methionine metabolism (121 genes)
ath00620 [list] [network] Pyruvate metabolism (86 genes)
ath00630 [list] [network] Glyoxylate and dicarboxylate metabolism (78 genes)
ath00710 [list] [network] Carbon fixation in photosynthetic organisms (69 genes)
ath01200 [list] [network] Carbon metabolism (273 genes)
Protein NP_001031860.1  NP_001078556.1  NP_001119199.1  NP_001330735.1  NP_196528.1 
BLAST NP_001031860.1  NP_001078556.1  NP_001119199.1  NP_001330735.1  NP_196528.1 
Orthologous [Ortholog page] LOC732641 (gma)gMDH (sly)PMDH1 (ath)LOC4334274 (osa)LOC4352871 (osa)LOC7465546 (ppo)LOC7469671 (ppo)LOC11405683 (mtr)LOC11420535 (mtr)LOC100170735 (gma)LOC100193491 (zma)LOC100232924 (vvi)LOC100260994 (vvi)LOC100282134 (zma)LOC100799793 (gma)LOC101249428 (sly)LOC103847223 (bra)LOC103850366 (bra)LOC103864390 (bra)
Subcellular
localization
wolf
cyto 6,  pero 3  (predict for NP_001031860.1)
cyto 6,  pero 3,  cyto_nucl 3,  cyto_E.R. 3,  cyto_plas 3  (predict for NP_001078556.1)
cyto 7,  pero 3  (predict for NP_001119199.1)
cyto 6,  pero 4  (predict for NP_001330735.1)
cyto 5,  pero 4  (predict for NP_196528.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001031860.1)
other 8  (predict for NP_001078556.1)
other 6  (predict for NP_001119199.1)
other 6  (predict for NP_001330735.1)
other 6  (predict for NP_196528.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 12
ath00630 Glyoxylate and dicarboxylate metabolism 8
ath00710 Carbon fixation in photosynthetic organisms 7
ath00260 Glycine, serine and threonine metabolism 4
ath00910 Nitrogen metabolism 3
Genes directly connected with PMDH2 on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
14.7 GOX1 Aldolase-type TIM barrel family protein [detail] 820665
12.6 HPR hydroxypyruvate reductase [detail] 843129
11.7 CRB chloroplast RNA binding protein [detail] 837455
11.6 PRK phosphoribulokinase [detail] 840098
11.3 PnsB1 NDH-dependent cyclic electron flow 1 [detail] 838168
9.8 GLU1 glutamate synthase 1 [detail] 830292
8.5 GOX2 Aldolase-type TIM barrel family protein [detail] 820664
8.2 CA2 carbonic anhydrase 2 [detail] 831326
7.6 AGT alanine:glyoxylate aminotransferase [detail] 815822
Coexpressed
gene list
[Coexpressed gene list for PMDH2]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
250498_at
250498_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
250498_at
250498_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
250498_at
250498_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 830825    
Refseq ID (protein) NP_001031860.1 
NP_001078556.1 
NP_001119199.1 
NP_001330735.1 
NP_196528.1 


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