[←][→] ath   At5g09660 Gene
functional annotation
Function   peroxisomal NAD-malate dehydrogenase 2    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0080093 [list] [network] regulation of photorespiration  (4 genes)  IMP  
GO:0031998 [list] [network] regulation of fatty acid beta-oxidation  (5 genes)  IGI IMP  
GO:0006108 [list] [network] malate metabolic process  (14 genes)  IEA  
GO:0006099 [list] [network] tricarboxylic acid cycle  (22 genes)  IEA  
GO:0019752 [list] [network] carboxylic acid metabolic process  (1307 genes)  IEA  
GO CC
GO:0048046 [list] [network] apoplast  (305 genes)  HDA  
GO:0005777 [list] [network] peroxisome  (311 genes)  HDA IDA  
GO:0042579 [list] [network] microbody  (311 genes)  ISS  
GO:0009941 [list] [network] chloroplast envelope  (582 genes)  HDA  
GO:0000325 [list] [network] plant-type vacuole  (785 genes)  HDA  
GO:0005886 [list] [network] plasma membrane  (2529 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5004 genes)  HDA  
GO:0005737 [list] [network] cytoplasm  (13880 genes)  ISM  
GO MF
GO:0016615 [list] [network] malate dehydrogenase activity  (10 genes)  ISS  
KEGG ath00020 [list] [network] Citrate cycle (TCA cycle) (64 genes)
ath00270 [list] [network] Cysteine and methionine metabolism (124 genes)
ath00620 [list] [network] Pyruvate metabolism (97 genes)
ath00630 [list] [network] Glyoxylate and dicarboxylate metabolism (78 genes)
ath00710 [list] [network] Carbon fixation in photosynthetic organisms (69 genes)
ath01200 [list] [network] Carbon metabolism (273 genes)
Protein NP_001031860.1  NP_001078556.1  NP_001119199.1  NP_001330735.1  NP_196528.1 
BLAST NP_001031860.1  NP_001078556.1  NP_001119199.1  NP_001330735.1  NP_196528.1 
Orthologous [Ortholog page] LOC543109 (tae)  LOC732641 (gma)  gMDH (sly)  PMDH1 (ath)  LOC4334274 (osa)  LOC4352871 (osa)  LOC7465546 (ppo)  LOC7469671 (ppo)  LOC7478683 (ppo)  LOC11405683 (mtr)  LOC11420535 (mtr)  LOC100170735 (gma)  LOC100799793 (gma)  LOC101249428 (sly)  LOC103847223 (bra)  LOC103850366 (bra)  LOC103864390 (bra)  LOC123101999 (tae)  LOC123105182 (tae)  LOC123110116 (tae)  LOC123113465 (tae)  LOC123119122 (tae)  LOC123400199 (hvu)  LOC123452448 (hvu) 
Subcellular
localization
wolf
cyto 6,  pero 3  (predict for NP_001031860.1)
cyto 6,  pero 3,  cyto_nucl 3,  cyto_E.R. 3,  cyto_plas 3  (predict for NP_001078556.1)
cyto 7,  pero 3  (predict for NP_001119199.1)
cyto 6,  pero 4  (predict for NP_001330735.1)
cyto 5,  pero 4  (predict for NP_196528.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001031860.1)
other 8  (predict for NP_001078556.1)
other 6  (predict for NP_001119199.1)
other 6  (predict for NP_001330735.1)
other 6  (predict for NP_196528.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 12
ath00710 Carbon fixation in photosynthetic organisms 8
ath00630 Glyoxylate and dicarboxylate metabolism 6
ath00910 Nitrogen metabolism 3
ath04146 Peroxisome 3
Genes directly connected with PMDH2 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
14.8 GOX1 Aldolase-type TIM barrel family protein [detail] 820665
14.7 HPR hydroxypyruvate reductase [detail] 843129
12.1 GAPB glyceraldehyde-3-phosphate dehydrogenase B subunit [detail] 840895
11.1 PnsB1 NDH-dependent cyclic electron flow 1 [detail] 838168
10.5 NdhU Chaperone DnaJ-domain superfamily protein [detail] 832247
9.5 GLU1 glutamate synthase 1 [detail] 830292
9.0 CA2 carbonic anhydrase 2 [detail] 831326
8.4 GOX2 Aldolase-type TIM barrel family protein [detail] 820664
7.5 NdhO NAD(P)H:plastoquinone dehydrogenase complex subunit O [detail] 843827
7.0 AGT alanine:glyoxylate aminotransferase [detail] 815822
5.3 AT2G35830 ureidoglycolate hydrolase [detail] 818156
Coexpressed
gene list		 [Coexpressed gene list for PMDH2]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
250498_at
250498_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
250498_at
250498_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
250498_at
250498_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 830825      
Refseq ID (protein) NP_001031860.1 
NP_001078556.1 
NP_001119199.1 
NP_001330735.1 
NP_196528.1 


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