[←][→] ath   At5g10800 Gene
functional annotation
Function   RNA recognition motif (RRM)-containing protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (13880 genes)  ISM  
GO MF
KEGG ath03040 [list] [network] Spliceosome (203 genes)
Protein NP_001331098.1  NP_001331099.1  NP_196641.2 
BLAST NP_001331098.1  NP_001331099.1  NP_196641.2 
Orthologous [Ortholog page] RRC1 (ath)  LOC4328504 (osa)  LOC7465430 (ppo)  LOC7489161 (ppo)  LOC11440509 (mtr)  LOC100775729 (gma)  LOC100776093 (gma)  LOC101261199 (sly)  LOC103837075 (bra)  LOC123049387 (tae)  LOC123123772 (tae)  LOC123132485 (tae)  LOC123136556 (tae)  LOC123144063 (tae)  LOC123181405 (tae)  LOC123401031 (hvu)  LOC123435379 (hvu) 
Subcellular
localization
wolf
nucl 5,  cyto 4  (predict for NP_001331098.1)
cyto 7,  nucl 1,  chlo 1,  cysk 1,  nucl_plas 1  (predict for NP_001331099.1)
nucl 7,  cyto 3  (predict for NP_196641.2)
Subcellular
localization
TargetP
other 9  (predict for NP_001331098.1)
other 8,  mito 3  (predict for NP_001331099.1)
other 9  (predict for NP_196641.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with AT5G10800 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
6.2 AT4G29990 Leucine-rich repeat transmembrane protein kinase protein [detail] 829122
5.5 AT5G06670 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 830555
5.5 TTL coiled coil protein [detail] 828592
4.7 AT5G03250 Phototropic-responsive NPH3 family protein [detail] 831894
4.7 BGLU43 beta glucosidase 43 [detail] 821332
4.1 AT1G29730 Leucine-rich repeat transmembrane protein kinase [detail] 839851
Coexpressed
gene list		 [Coexpressed gene list for AT5G10800]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
250447_at
250447_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
250447_at
250447_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
250447_at
250447_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 830947      
Refseq ID (protein) NP_001331098.1 
NP_001331099.1 
NP_196641.2 


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