ATTED-II : GeneID search result

[←][→] ath AT5G10980 Gene

functional annotation

Function

Histone superfamily protein

GO BP

GO CC

GO:0030875 [list] [network] rDNA protrusion	(4 genes)	IDA
GO:0000786 [list] [network] nucleosome	(45 genes)	IEA
GO:0005730 [list] [network] nucleolus	(477 genes)	IDA
GO:0005886 [list] [network] plasma membrane	(3771 genes)	HDA
GO:0005634 [list] [network] nucleus	(10793 genes)	IDA ISM

GO MF

GO:0046982 [list] [network] protein heterodimerization activity	(122 genes)	IEA
GO:0003677 [list] [network] DNA binding	(2280 genes)	IEA
GO:0005515 [list] [network] protein binding	(4605 genes)	IPI

KEGG

Protein

NP_196659.1

BLAST

NP_196659.1

Orthologous

[Ortholog page] LOC544102 (sly) AT3G27360 (ath) AT4G40030 (ath) AT4G40040 (ath) AT5G10390 (ath) AT5G10400 (ath) HTR11 (ath) AT5G65360 (ath) AT1G09200 (ath) AT1G13370 (ath) MGH3 (ath) AT1G75600 (ath) LOC4325069 (osa) LOC4333019 (osa) LOC4336000 (osa) LOC4338913 (osa) LOC4340006 (osa) LOC4340203 (osa) LOC4349820 (osa) LOC9269345 (osa) LOC9271591 (osa) LOC11405531 (mtr) LOC11409321 (mtr) LOC11409357 (mtr) LOC11409976 (mtr) LOC11410249 (mtr) LOC11413536 (mtr) LOC11419237 (mtr) LOC11430310 (mtr) LOC11430980 (mtr) LOC11433985 (mtr) LOC11435575 (mtr) LOC11436749 (mtr) LOC11437960 (mtr) LOC25492607 (mtr) LOC25493065 (mtr) LOC25493536 (mtr) LOC25502181 (mtr) LOC25502270 (mtr) LOC100192589 (zma) LOC100192746 (zma) LOC100194139 (zma) LOC100248958 (vvi) LOC100253546 (vvi) LOC100257369 (vvi) LOC100258688 (vvi) LOC100258920 (vvi) LOC100260775 (vvi) LOC100263009 (vvi) LOC100265845 (vvi) LOC100305466 (gma) LOC100306416 (gma) LOC100381287 (zma) LOC100502113 (zma) LOC100781420 (gma) LOC100783845 (gma) LOC100785082 (gma) LOC100788696 (gma) LOC100789332 (gma) LOC100797506 (gma) LOC100807058 (gma) LOC100809785 (gma) LOC100810646 (gma) LOC100817768 (gma) LOC100818932 (gma) LOC100855220 (vvi) LOC101245793 (sly) LOC101250929 (sly) LOC101252717 (sly) LOC101253224 (sly) LOC101254197 (sly) LOC101260571 (sly) LOC101262275 (sly) LOC101263309 (sly) LOC101263845 (sly) LOC101267861 (sly) LOC101268556 (sly) LOC102661475 (gma) LOC102669107 (gma) LOC103627323 (zma) LOC103629514 (zma) LOC103636448 (zma) LOC103638044 (zma) LOC103638137 (zma) LOC103641629 (zma) LOC103641644 (zma) LOC103646471 (zma) LOC103646477 (zma) LOC103650575 (zma) LOC103653610 (zma) LOC103830640 (bra) LOC103836349 (bra) LOC103837572 (bra) LOC103839289 (bra) LOC103850291 (bra) LOC103850326 (bra) LOC103852966 (bra) LOC103854530 (bra) LOC103854831 (bra) LOC103855863 (bra) LOC103855894 (bra) LOC107276414 (osa) LOC107648867 (zma)

Subcellular
localization
wolf

nucl 8, chlo 1

(predict for NP_196659.1)

Subcellular
localization
TargetP

chlo 6, mito 3

(predict for NP_196659.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with AT5G10980 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
12.7	AT3G53730	Histone superfamily protein	[detail]	824540
12.0	AT1G06760	winged-helix DNA-binding transcription factor family protein	[detail]	837187
10.5	RAT5	Histone superfamily protein	[detail]	835553
10.1	AT4G40040	Histone superfamily protein	[detail]	830165
6.9	AT5G05360	hypothetical protein	[detail]	830418
5.2	AT4G40030	Histone superfamily protein	[detail]	830164

Coexpressed
gene list

[Coexpressed gene list for AT5G10980]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

250397_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

250397_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

250397_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	830965
Refseq ID (protein)	NP_196659.1

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