[←][→] ath   At5g11200 Gene
functional annotation
Function   DEAD/DEAH box RNA helicase family protein  
GO BP
GO CC
GO:0009505 [list] [network] plant-type cell wall  (498 genes)  HDA  
GO:0009506 [list] [network] plasmodesma  (871 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2559 genes)  RCA  
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO:0005737 [list] [network] cytoplasm  (13880 genes)  ISM  
GO MF
GO:0003725 [list] [network] double-stranded RNA binding  (13 genes)  IDA  
GO:0003697 [list] [network] single-stranded DNA binding  (37 genes)  IDA  
GO:0003724 [list] [network] RNA helicase activity  (45 genes)  IDA  
GO:0016887 [list] [network] ATP hydrolysis activity  (115 genes)  IDA  
GO:0003690 [list] [network] double-stranded DNA binding  (789 genes)  IDA  
GO:0003729 [list] [network] mRNA binding  (1535 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath03013 [list] [network] Nucleocytoplasmic transport (103 genes)
ath03015 [list] [network] mRNA surveillance pathway (119 genes)
ath03040 [list] [network] Spliceosome (203 genes)
Protein NP_001154706.1  NP_001154707.1  NP_568245.1 
BLAST NP_001154706.1  NP_001154707.1  NP_568245.1 
Orthologous [Ortholog page] UAP56a (ath)  AIP1 (osa)  AIP2 (osa)  LOC7462984 (ppo)  LOC7468631 (ppo)  LOC11424505 (mtr)  LOC11431965 (mtr)  LOC25491302 (mtr)  LOC100785358 (gma)  LOC100796232 (gma)  LOC100799082 (gma)  LOC100808957 (gma)  LOC101259772 (sly)  LOC101261336 (sly)  LOC103846744 (bra)  LOC103846746 (bra)  LOC103850757 (bra)  LOC103850759 (bra)  LOC103855903 (bra)  LOC123061264 (tae)  LOC123069793 (tae)  LOC123071061 (tae)  LOC123078347 (tae)  LOC123149969 (tae)  LOC123183423 (tae)  LOC123183424 (tae)  LOC123443683 (hvu)  LOC123452774 (hvu) 
Subcellular
localization
wolf
chlo 3,  plas 2,  nucl 1,  chlo_mito 1,  cysk_nucl 1,  E.R._plas 1,  mito_plas 1,  cyto_plas 1  (predict for NP_001154706.1)
cyto 6,  nucl 3,  cyto_pero 3,  cyto_E.R. 3,  cyto_plas 3  (predict for NP_001154707.1)
cyto 6,  nucl 2,  extr 1,  cysk_nucl 1  (predict for NP_568245.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001154706.1)
other 9  (predict for NP_001154707.1)
other 9  (predict for NP_568245.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03013 Nucleocytoplasmic transport 2
ath03015 mRNA surveillance pathway 2
ath03008 Ribosome biogenesis in eukaryotes 2
ath00240 Pyrimidine metabolism 2
Genes directly connected with UAP56b on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
16.0 UAP56a DEAD/DEAH box RNA helicase family protein [detail] 830986
9.1 EIF2 GAMMA eukaryotic translation initiation factor 2 gamma subunit [detail] 839238
7.1 AT2G19540 Transducin family protein / WD-40 repeat family protein [detail] 816473
7.1 AT2G47250 RNA helicase family protein [detail] 819338
6.0 NRPB3 DNA-directed RNA polymerase family protein [detail] 816035
Coexpressed
gene list		 [Coexpressed gene list for UAP56b]
Gene expression
All samples [Expression pattern for all samples]
Link to other DBs
Entrez Gene ID 830990      
Refseq ID (protein) NP_001154706.1 
NP_001154707.1 
NP_568245.1 


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