[←][→] ath   At5g11240 Gene
functional annotation
Function   transducin family protein / WD-40 repeat family protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0046345 [list] [network] abscisic acid catabolic process  (4 genes)  IMP  
GO:0006364 [list] [network] rRNA processing  (169 genes)  IPI  
GO CC
GO:0034455 [list] [network] t-UTP complex  (1 genes)  IPI  
GO:0005730 [list] [network] nucleolus  (387 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO MF
KEGG ath03008 [list] [network] Ribosome biogenesis in eukaryotes (96 genes)
Protein NP_196685.2 
BLAST NP_196685.2 
Orthologous [Ortholog page] LOC4332567 (osa)  LOC7496504 (ppo)  LOC11420256 (mtr)  LOC100784148 (gma)  LOC100815458 (gma)  LOC101243653 (sly)  LOC102667004 (gma)  LOC103846739 (bra)  LOC103850762 (bra)  LOC112328842 (ppo)  LOC123085629 (tae)  LOC123092396 (tae)  LOC123097717 (tae)  LOC123112472 (tae)  LOC123448861 (hvu) 
Subcellular
localization
wolf
nucl 5,  cyto 3,  cysk_nucl 3  (predict for NP_196685.2)
Subcellular
localization
TargetP
scret 6,  other 6  (predict for NP_196685.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 9
ath03020 RNA polymerase 3
Genes directly connected with AT5G11240 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
16.1 AT4G04940 transducin family protein / WD-40 repeat family protein [detail] 825833
14.3 AT2G18900 Transducin/WD40 repeat-like superfamily protein [detail] 816406
13.1 AT3G21540 transducin family protein / WD-40 repeat family protein [detail] 821708
12.9 AT4G28450 WD repeat and SOF domain-containing protein 1 [detail] 828962
12.1 AT5G22100 RNA cyclase family protein [detail] 832271
11.1 AT1G42440 pre-rRNA-processing TSR1-like protein [detail] 840848
Coexpressed
gene list		 [Coexpressed gene list for AT5G11240]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
250418_at
250418_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
250418_at
250418_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
250418_at
250418_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 830994      
Refseq ID (protein) NP_196685.2 


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