[←][→] ath   At5g13930 Gene
functional annotation
Function   Chalcone and stilbene synthase family protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0009715 [list] [network] chalcone biosynthetic process  (1 genes)  IMP  
GO:0031540 [list] [network] regulation of anthocyanin biosynthetic process  (18 genes)  IEP  
GO:0009926 [list] [network] auxin polar transport  (69 genes)  IMP  
GO:0010224 [list] [network] response to UV-B  (75 genes)  IMP  
GO:0009813 [list] [network] flavonoid biosynthetic process  (84 genes)  IMP ISS  
GO:0009629 [list] [network] response to gravity  (113 genes)  IMP  
GO:0009733 [list] [network] response to auxin  (384 genes)  IEP  
GO:0006979 [list] [network] response to oxidative stress  (545 genes)  IEP  
GO:0009753 [list] [network] response to jasmonic acid  (611 genes)  IEP  
GO:0009611 [list] [network] response to wounding  (816 genes)  IEP  
GO CC
GO:0009705 [list] [network] plant-type vacuole membrane  (112 genes)  IDA  
GO:0005783 [list] [network] endoplasmic reticulum  (856 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (13880 genes)  ISM  
GO MF
GO:0016210 [list] [network] naringenin-chalcone synthase activity  (1 genes)  IMP  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath00941 [list] [network] Flavonoid biosynthesis (25 genes)
ath00960 [list] [network] Tropane, piperidine and pyridine alkaloid biosynthesis (36 genes)
ath04712 [list] [network] Circadian rhythm - plant (39 genes)
Protein NP_196897.1 
BLAST NP_196897.1 
Orthologous [Ortholog page] LOC543104 (tae)  CHS1 (gma)  CHS1 (sly)  CHS2 (sly)  LOC4342725 (osa)  LOC4343313 (osa)  LOC4350636 (osa)  LOC7460519 (ppo)  LOC7460520 (ppo)  LOC7466313 (ppo)  LOC7493197 (ppo)  LOC7493198 (ppo)  LOC7493199 (ppo)  LOC11407003 (mtr)  LOC11411483 (mtr)  LOC11418796 (mtr)  LOC11419346 (mtr)  LOC11420334 (mtr)  LOC11420610 (mtr)  LOC11420611 (mtr)  LOC11421144 (mtr)  LOC11424172 (mtr)  LOC11428910 (mtr)  LOC11436702 (mtr)  LOC11438511 (mtr)  LOC11439469 (mtr)  LOC11440049 (mtr)  LOC11442534 (mtr)  LOC25485043 (mtr)  LOC25489717 (mtr)  LOC25494497 (mtr)  LOC25494498 (mtr)  LOC25499670 (mtr)  LOC100037528 (tae)  CHS8 (gma)  CHS13 (gma)  CHS4A (gma)  CHS7 (gma)  CHS11 (gma)  CHS10 (gma)  CHS3C (gma)  CHS9 (gma)  CHS3 (gma)  CHS4B (gma)  CHS6 (gma)  LOC103836793 (bra)  LOC103846527 (bra)  LOC103850907 (bra)  LOC103854548 (bra)  LOC103856040 (bra)  CHS3B (gma)  CHS5 (gma)  LOC107278066 (osa)  LOC120577917 (mtr)  LOC121175284 (gma)  LOC121175285 (gma)  LOC123040104 (tae)  LOC123047221 (tae)  LOC123047543 (tae)  LOC123048273 (tae)  LOC123051067 (tae)  LOC123051070 (tae)  LOC123055015 (tae)  LOC123071871 (tae)  LOC123107793 (tae)  LOC123116940 (tae)  LOC123120911 (tae)  LOC123123470 (tae)  LOC123123471 (tae)  LOC123179972 (tae)  LOC123184282 (tae)  LOC123186969 (tae)  LOC123186993 (tae)  LOC123187050 (tae)  LOC123190869 (tae)  LOC123395230 (hvu)  LOC123398632 (hvu)  LOC123420058 (hvu)  LOC123424400 (hvu)  LOC123428233 (hvu)  LOC123429115 (hvu)  LOC123442440 (hvu)  LOC123442515 (hvu)  LOC123442530 (hvu)  LOC123442618 (hvu)  LOC123442699 (hvu)  LOC123442790 (hvu)  LOC123442876 (hvu)  LOC123442962 (hvu)  LOC123443044 (hvu) 
Subcellular
localization
wolf
cyto 6,  pero 2,  plas 1  (predict for NP_196897.1)
Subcellular
localization
TargetP
other 7  (predict for NP_196897.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00941 Flavonoid biosynthesis 5
ath00944 Flavone and flavonol biosynthesis 3
ath00940 Phenylpropanoid biosynthesis 2
Genes directly connected with TT4 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
20.9 FLS1 flavonol synthase 1 [detail] 830765
20.6 CHIL Chalcone-flavanone isomerase family protein [detail] 830409
17.6 TT5 Chalcone-flavanone isomerase family protein [detail] 824678
13.2 TT7 Cytochrome P450 superfamily protein [detail] 830693
12.9 AT5G62210 Embryo-specific protein 3, (ATS3) [detail] 836342
11.7 AT5G22020 Calcium-dependent phosphotriesterase superfamily protein [detail] 832262
11.0 KAT5 peroxisomal 3-keto-acyl-CoA thiolase 2 [detail] 834946
10.3 UGT78D2 UDP-glucosyl transferase 78D2 [detail] 831568
9.2 RHM1 rhamnose biosynthesis 1 [detail] 844193
8.6 ELIP1 Chlorophyll A-B binding family protein [detail] 821855
8.5 AT5G17040 UDP-Glycosyltransferase superfamily protein [detail] 831567
6.0 UGT78D1 UDP-glucosyl transferase 78D1 [detail] 839933
Coexpressed
gene list		 [Coexpressed gene list for TT4]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
250207_at
250207_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
250207_at
250207_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
250207_at
250207_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 831241      
Refseq ID (protein) NP_196897.1 


The preparation time of this page was 0.1 [sec].