| functional annotation |
| Function |
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family |
|
| GO BP |
|
GO:0052324 [list] [network] plant-type cell wall cellulose biosynthetic process
|
(10 genes)
|
IBA
|
 |
|
GO:0010215 [list] [network] cellulose microfibril organization
|
(15 genes)
|
IEA
|
|
|
GO:0009834 [list] [network] plant-type secondary cell wall biogenesis
|
(58 genes)
|
IMP
|
|
|
GO:0009664 [list] [network] plant-type cell wall organization
|
(145 genes)
|
IBA
|
|
|
GO:0009832 [list] [network] plant-type cell wall biogenesis
|
(150 genes)
|
IBA
|
|
|
| GO CC |
|
GO:0046658 [list] [network] anchored component of plasma membrane
|
(154 genes)
|
IBA
|
|
|
GO:0031225 [list] [network] anchored component of membrane
|
(303 genes)
|
TAS
|
|
|
GO:0005774 [list] [network] vacuolar membrane
|
(624 genes)
|
IDA
|
|
|
GO:0005886 [list] [network] plasma membrane
|
(3771 genes)
|
IDA
ISM
|
|
|
| GO MF |
|
| KEGG |
|
|
| Protein |
NP_001331537.1
NP_001331538.1
NP_001331539.1
NP_001331540.1
NP_197067.2
|
| BLAST |
NP_001331537.1
NP_001331538.1
NP_001331539.1
NP_001331540.1
NP_197067.2
|
| Orthologous |
[Ortholog page]
LOC778435 (zma)
LOC4333114 (osa)
LOC4343845 (osa)
LOC7480591 (ppo)
LOC7484714 (ppo)
LOC25495420 (mtr)
LOC25497597 (mtr)
LOC100037800 (zma)
LOC100244586 (vvi)
LOC100250060 (vvi)
LOC100258803 (vvi)
LOC100783410 (gma)
LOC100784352 (gma)
LOC100798678 (gma)
LOC101253146 (sly)
LOC101260119 (sly)
LOC101260407 (sly)
LOC103847531 (bra)
LOC103850996 (bra)
LOC103856152 (bra)
|
Subcellular
localization
wolf |
|
vacu 6,
golg 2,
extr 1,
golg_plas 1
|
(predict for NP_001331537.1)
|
|
nucl 4,
cyto 2,
cysk_nucl 2,
plas 1,
cyto_E.R. 1
|
(predict for NP_001331538.1)
|
|
nucl 3,
vacu 3,
chlo 1,
golg 1,
cyto_nucl 1,
cysk_nucl 1,
E.R._vacu 1
|
(predict for NP_001331539.1)
|
|
nucl 3,
vacu 3,
chlo 1,
golg 1,
cyto_nucl 1,
cysk_nucl 1,
E.R._vacu 1
|
(predict for NP_001331540.1)
|
|
vacu 4,
golg 3,
golg_plas 3,
plas 2
|
(predict for NP_197067.2)
|
|
Subcellular
localization
TargetP |
|
scret 9
|
(predict for NP_001331537.1)
|
|
other 7
|
(predict for NP_001331538.1)
|
|
mito 7,
other 6
|
(predict for NP_001331539.1)
|
|
mito 7,
other 6
|
(predict for NP_001331540.1)
|
|
scret 9
|
(predict for NP_197067.2)
|
|
| Gene coexpression |
Network*for
coexpressed
genes |
Genes directly connected with IRX6 on the network
| coex z* |
Locus |
Function* |
Coexpression
detail |
Entrez Gene ID* |
| 20.5 |
IRX3 |
Cellulose synthase family protein |
[detail] |
831608 |
| 19.0 |
IRX1 |
cellulose synthase family protein |
[detail] |
827612 |
| 17.8 |
CESA4 |
cellulose synthase A4 |
[detail] |
834426 |
| 17.6 |
GAUT12 |
galacturonosyltransferase 12 |
[detail] |
835558 |
| 17.3 |
IRX9 |
Nucleotide-diphospho-sugar transferases superfamily protein |
[detail] |
818285 |
| 16.3 |
AT2G28315 |
Nucleotide/sugar transporter family protein |
[detail] |
817378 |
| 15.8 |
AT5G60720 |
electron transporter, putative (Protein of unknown function, DUF547) |
[detail] |
836193 |
| 11.7 |
TBL3 |
trichome birefringence-like protein (DUF828) |
[detail] |
830298 |
| 11.4 |
NAC073 |
NAC domain containing protein 73 |
[detail] |
828968 |
| 11.1 |
GUT2 |
Exostosin family protein |
[detail] |
839635 |
| 10.2 |
RIC4 |
ROP-interactive CRIB motif-containing protein 4 |
[detail] |
831510 |
| 9.7 |
AT4G27435 |
fiber (DUF1218) |
[detail] |
828852 |
| 7.5 |
AT1G66810 |
Zinc finger C-x8-C-x5-C-x3-H type family protein |
[detail] |
842999 |
| 5.8 |
AT5G42210 |
Major facilitator superfamily protein |
[detail] |
834226 |
| 5.4 |
IQD13 |
IQ-domain 13 |
[detail] |
825138 |
|
Coexpressed
gene list |
[Coexpressed gene list for IRX6]
|
| Gene expression |
| All samples |
[Expression pattern for all samples]
|
AtGenExpress*
(Development) |
246512_at
X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.
|
AtGenExpress*
(Stress) |
246512_at
X axis is samples (pdf file), and Y axis is log2-expression.
|
AtGenExpress*
(Hormone) |
246512_at
X axis is samples (xls file), and Y axis is log-expression.
|
AT5G15630 Gene
