[←][→] ath   At5g19400 Gene
functional annotation
Function   Telomerase activating protein Est1    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0090306 [list] [network] meiotic spindle assembly  (4 genes)  IMP  
GO:0000184 [list] [network] nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  (7 genes)  IMP  
GO:0051321 [list] [network] meiotic cell cycle  (276 genes)  IMP  
GO CC
GO:0000932 [list] [network] P-body  (32 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath03015 [list] [network] mRNA surveillance pathway (119 genes)
Protein NP_001190336.1  NP_001190337.1  NP_001330788.1  NP_001330789.1  NP_197441.3 
BLAST NP_001190336.1  NP_001190337.1  NP_001330788.1  NP_001330789.1  NP_197441.3 
Orthologous [Ortholog page] LOC4345227 (osa)  LOC7479669 (ppo)  LOC7480120 (ppo)  LOC11431860 (mtr)  LOC25480553 (mtr)  LOC100779982 (gma)  LOC100787602 (gma)  LOC100804837 (gma)  LOC101244332 (sly)  LOC101247106 (sly)  LOC103845757 (bra)  LOC103851271 (bra)  LOC123103310 (tae)  LOC123111500 (tae)  LOC123120719 (tae)  LOC123398020 (hvu) 
Subcellular
localization
wolf
chlo 4,  nucl 2,  cysk_nucl 1,  vacu 1,  mito 1,  plas 1,  E.R. 1,  E.R._plas 1,  mito_plas 1  (predict for NP_001190336.1)
chlo 4,  nucl 2,  cysk_nucl 1,  vacu 1,  mito 1,  plas 1,  E.R. 1,  E.R._plas 1,  mito_plas 1  (predict for NP_001190337.1)
chlo 4,  nucl 2,  cysk_nucl 1,  vacu 1,  mito 1,  extr 1,  E.R. 1  (predict for NP_001330788.1)
chlo 4,  nucl 2,  cysk_nucl 1,  vacu 1,  mito 1,  extr 1,  E.R. 1  (predict for NP_001330789.1)
chlo 4,  nucl 2,  cysk_nucl 1,  vacu 1,  mito 1,  plas 1,  E.R. 1,  E.R._plas 1,  mito_plas 1  (predict for NP_197441.3)
Subcellular
localization
TargetP
other 8  (predict for NP_001190336.1)
other 8  (predict for NP_001190337.1)
other 8  (predict for NP_001330788.1)
other 8  (predict for NP_001330789.1)
other 8  (predict for NP_197441.3)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 5
ath03015 mRNA surveillance pathway 3
ath03013 Nucleocytoplasmic transport 2
Genes directly connected with SMG7 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
8.6 LBA1 RNA helicase [detail] 834747
8.3 AT5G60170 RNA binding (RRM/RBD/RNP motifs) family protein [detail] 836139
8.2 AT1G79090 topoisomerase II-associated protein [detail] 844250
7.6 UPF3 Smg-4/UPF3 family protein [detail] 840295
6.6 AT3G06620 PAS domain-containing protein tyrosine kinase family protein [detail] 819841
5.9 RIN2 RPM1 interacting protein 2 [detail] 828626
5.8 EIL3 ETHYLENE-INSENSITIVE3-like 3 [detail] 843708
Coexpressed
gene list		 [Coexpressed gene list for SMG7]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
246066_at
246066_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
246066_at
246066_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
246066_at
246066_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 832060      
Refseq ID (protein) NP_001190336.1 
NP_001190337.1 
NP_001330788.1 
NP_001330789.1 
NP_197441.3 


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