[←][→] ath   At5g23080 Gene
functional annotation
Function   SWAP (Suppressor-of-White-APricot)/surp domain-containing protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0035196 [list] [network] miRNA processing  (29 genes)  IMP  
GO:0030422 [list] [network] siRNA processing  (30 genes)  IMP  
GO:0009734 [list] [network] auxin-activated signaling pathway  (65 genes)  IMP  
GO:0009926 [list] [network] auxin polar transport  (69 genes)  IMP  
GO:0010087 [list] [network] phloem or xylem histogenesis  (158 genes)  IMP  
GO:0006396 [list] [network] RNA processing  (567 genes)  TAS  
GO:0007275 [list] [network] multicellular organism development  (4349 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO MF
GO:0070883 [list] [network] pre-miRNA binding  (1 genes)  IDA  
GO:0070878 [list] [network] primary miRNA binding  (3 genes)  IDA  
GO:0003723 [list] [network] RNA binding  (1729 genes)  TAS  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG
Protein NP_001031926.1  NP_197699.2 
BLAST NP_001031926.1  NP_197699.2 
Orthologous [Ortholog page] LOC4341077 (osa)  LOC7490080 (ppo)  LOC11441585 (mtr)  LOC100500422 (gma)  LOC100796934 (gma)  LOC101243875 (sly)  LOC103837348 (bra)  LOC103860531 (bra)  LOC123150748 (tae)  LOC123156409 (tae)  LOC123164435 (tae)  LOC123412942 (hvu) 
Subcellular
localization
wolf
nucl 10  (predict for NP_001031926.1)
nucl 10  (predict for NP_197699.2)
Subcellular
localization
TargetP
other 9  (predict for NP_001031926.1)
other 9  (predict for NP_197699.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
Genes directly connected with TGH on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
12.5 CDC5 cell division cycle 5 [detail] 837506
10.8 EMB3011 RNA helicase family protein [detail] 831141
9.5 AT2G02160 CCCH-type zinc finger family protein [detail] 814747
8.9 AT1G65280 DNAJ heat shock N-terminal domain-containing protein [detail] 842835
8.7 VIP5 plus-3 domain-containing protein [detail] 842395
5.7 LAP6 Chalcone and stilbene synthase family protein [detail] 839280
5.5 RAD4 DNA repair protein Rad4 family [detail] 831525
Coexpressed
gene list		 [Coexpressed gene list for TGH]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
249870_at
249870_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
249870_at
249870_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
249870_at
249870_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 832372      
Refseq ID (protein) NP_001031926.1 
NP_197699.2 


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