[←][→] ath   AT5G23080 Gene
functional annotation
Function   SWAP (Suppressor-of-White-APricot)/surp domain-containing protein  
GO BP
GO:0035196 [list] [network] production of miRNAs involved in gene silencing by miRNA  (29 genes)  IMP  
GO:0030422 [list] [network] production of siRNA involved in RNA interference  (34 genes)  IMP  
GO:0009926 [list] [network] auxin polar transport  (66 genes)  IMP  
GO:0010087 [list] [network] phloem or xylem histogenesis  (102 genes)  IMP  
GO:0009734 [list] [network] auxin-activated signaling pathway  (196 genes)  IMP  
GO:0040008 [list] [network] regulation of growth  (315 genes)  IEA  
GO:0006397 [list] [network] mRNA processing  (376 genes)  IEA  
GO:0006396 [list] [network] RNA processing  (831 genes)  TAS  
GO CC
GO:0016607 [list] [network] nuclear speck  (86 genes)  IEA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA IDA ISM  
GO MF
GO:0070883 [list] [network] pre-miRNA binding  (1 genes)  IDA  
GO:0070878 [list] [network] primary miRNA binding  (3 genes)  IDA  
GO:0003723 [list] [network] RNA binding  (1790 genes)  TAS  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_001031926.1  NP_197699.2 
BLAST NP_001031926.1  NP_197699.2 
Orthologous [Ortholog page] LOC4341077 (osa)  LOC7490080 (ppo)  LOC11441585 (mtr)  LOC100242404 (vvi)  LOC100500422 (gma)  LOC100796934 (gma)  LOC101243875 (sly)  LOC103638373 (zma)  LOC103837348 (bra)  LOC103860531 (bra) 
Subcellular
localization
wolf
nucl 10  (predict for NP_001031926.1)
nucl 10  (predict for NP_197699.2)
Subcellular
localization
TargetP
other 9  (predict for NP_001031926.1)
other 9  (predict for NP_197699.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
Genes directly connected with TGH on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
11.5 CDC5 cell division cycle 5 [detail] 837506
10.7 EMB3011 RNA helicase family protein [detail] 831141
9.1 AT2G02160 CCCH-type zinc finger family protein [detail] 814747
8.2 VIP5 plus-3 domain-containing protein [detail] 842395
7.0 SMP1 Pre-mRNA splicing Prp18-interacting factor [detail] 842877
5.4 RAD4 DNA repair protein Rad4 family [detail] 831525
5.1 AT5G50780 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [detail] 835150
Coexpressed
gene list		 [Coexpressed gene list for TGH]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
249870_at
249870_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
249870_at
249870_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
249870_at
249870_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 832372      
Refseq ID (protein) NP_001031926.1 
NP_197699.2 


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