[←][→] ath   AT5G23420 Gene
functional annotation
Function   high-mobility group box 6  
GO BP
GO:0000741 [list] [network] karyogamy  (31 genes)  IMP  
GO:0010197 [list] [network] polar nucleus fusion  (31 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA ISM  
GO MF
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1599 genes)  ISS  
GO:0003677 [list] [network] DNA binding  (2280 genes)  IDA  
KEGG
Protein NP_001190371.1  NP_568431.1 
BLAST NP_001190371.1  NP_568431.1 
Orthologous [Ortholog page] LOC541952 (zma)  LOC4344416 (osa)  LOC7465590 (ppo)  LOC25485684 (mtr)  LOC100247584 (vvi)  LOC100306558 (gma)  LOC100810345 (gma)  LOC101247008 (sly)  LOC103854899 (bra)  LOC103865488 (bra) 
Subcellular
localization
wolf
nucl 4,  chlo 3,  plas 1,  chlo_mito 1  (predict for NP_001190371.1)
nucl 10  (predict for NP_568431.1)
Subcellular
localization
TargetP
chlo 5  (predict for NP_001190371.1)
chlo 6  (predict for NP_568431.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 4
ath03440 Homologous recombination 4
ath03420 Nucleotide excision repair 3
ath03430 Mismatch repair 3
Genes directly connected with HMGB6 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
12.9 AT3G14740 RING/FYVE/PHD zinc finger superfamily protein [detail] 820702
12.8 RPA70D Replication factor-A protein 1-like protein [detail] 836221
12.5 RPA70B RPA70-kDa subunit B [detail] 830696
7.6 AT5G25580 hypothetical protein [detail] 832633
4.3 AT5G05330 HMG-box (high mobility group) DNA-binding family protein [detail] 830415
4.3 AT5G23405 HMG-box (high mobility group) DNA-binding family protein [detail] 832406
Coexpressed
gene list		 [Coexpressed gene list for HMGB6]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
249836_at
249836_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
249836_at
249836_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
249836_at
249836_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 832408      
Refseq ID (protein) NP_001190371.1 
NP_568431.1 


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