[←][→] ath   At5g24120 Gene
functional annotation
Function   sigma factor E    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0006352 [list] [network] DNA-templated transcription initiation  (26 genes)  ISS TAS  
GO:0010207 [list] [network] photosystem II assembly  (27 genes)  IMP  
GO:0071483 [list] [network] cellular response to blue light  (34 genes)  IEP  
GO:0071472 [list] [network] cellular response to salt stress  (41 genes)  IMP  
GO:0010218 [list] [network] response to far red light  (48 genes)  IEP  
GO:0010114 [list] [network] response to red light  (101 genes)  IEP  
GO:0009637 [list] [network] response to blue light  (160 genes)  IGI  
GO:0009553 [list] [network] embryo sac development  (163 genes)  IMP  
GO:0009658 [list] [network] chloroplast organization  (209 genes)  IMP  
GO:0045893 [list] [network] positive regulation of DNA-templated transcription  (272 genes)  IMP  
GO:2001141 [list] [network] regulation of RNA biosynthetic process  (1660 genes)  IMP  
GO CC
GO:0005739 [list] [network] mitochondrion  (4228 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5004 genes)  IDA ISM ISS  
GO MF
GO:0016987 [list] [network] sigma factor activity  (6 genes)  IMP ISS  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG
Protein NP_001330408.1  NP_001330409.1  NP_197800.1 
BLAST NP_001330408.1  NP_001330409.1  NP_197800.1 
Orthologous [Ortholog page] LOC4339759 (osa)  LOC11428191 (mtr)  LOC18103620 (ppo)  LOC18105512 (ppo)  LOC100776369 (gma)  LOC100796580 (gma)  LOC100811515 (gma)  SIG5B (gma)  LOC101252660 (sly)  LOC103865831 (bra)  LOC103874286 (bra)  LOC123070039 (tae)  LOC123148959 (tae)  LOC123183313 (tae)  LOC123452201 (hvu) 
Subcellular
localization
wolf
cyto 5,  chlo 4  (predict for NP_001330408.1)
cyto 5,  chlo 4  (predict for NP_001330409.1)
cyto 5,  chlo 4  (predict for NP_197800.1)
Subcellular
localization
TargetP
chlo 4  (predict for NP_001330408.1)
chlo 4  (predict for NP_001330409.1)
chlo 4  (predict for NP_197800.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00900 Terpenoid backbone biosynthesis 2
ath04712 Circadian rhythm - plant 2
Genes directly connected with SIGE on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
12.2 AT3G56290 potassium transporter [detail] 824796
10.1 SQE3 squalene epoxidase 3 [detail] 829932
9.8 AT5G35970 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 833589
9.1 AT5G50100 Putative thiol-disulfide oxidoreductase DCC [detail] 835074
9.0 SPA1 SPA (suppressor of phyA-105) protein family [detail] 819242
8.9 AT1G66330 senescence-associated family protein [detail] 842950
7.6 AT3G57020 Calcium-dependent phosphotriesterase superfamily protein [detail] 824869
6.8 ECT8 evolutionarily conserved C-terminal region 8 [detail] 844267
5.6 IPK1 inositol-pentakisphosphate 2-kinase 1 [detail] 834292
Coexpressed
gene list		 [Coexpressed gene list for SIGE]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
249769_at
249769_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
249769_at
249769_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
249769_at
249769_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 832477      
Refseq ID (protein) NP_001330408.1 
NP_001330409.1 
NP_197800.1 


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