[←][→] ath   AT5G24120 Gene
functional annotation
Function   sigma factor E  
GO BP
GO:0010207 [list] [network] photosystem II assembly  (25 genes)  IMP  
GO:0071483 [list] [network] cellular response to blue light  (27 genes)  IEP  
GO:0071472 [list] [network] cellular response to salt stress  (40 genes)  IMP  
GO:0010218 [list] [network] response to far red light  (54 genes)  IEP  
GO:0006352 [list] [network] DNA-templated transcription, initiation  (56 genes)  TAS  
GO:0010114 [list] [network] response to red light  (74 genes)  IEP  
GO:0009637 [list] [network] response to blue light  (98 genes)  IGI  
GO:0009553 [list] [network] embryo sac development  (146 genes)  IMP  
GO:0009658 [list] [network] chloroplast organization  (194 genes)  IMP  
GO:0045893 [list] [network] positive regulation of transcription, DNA-templated  (495 genes)  IMP  
GO:2001141 [list] [network] regulation of RNA biosynthetic process  (1988 genes)  IMP  
GO CC
GO:0005739 [list] [network] mitochondrion  (4405 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5095 genes)  IDA ISM  
GO MF
GO:0016987 [list] [network] sigma factor activity  (6 genes)  IMP ISS  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1599 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (2280 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_001330408.1  NP_001330409.1  NP_197800.1 
BLAST NP_001330408.1  NP_001330409.1  NP_197800.1 
Orthologous [Ortholog page] LOC4339759 (osa)  LOC11428191 (mtr)  LOC100250120 (vvi)  LOC100776369 (gma)  LOC100796580 (gma)  LOC100811515 (gma)  SIG5B (gma)  LOC101252660 (sly)  LOC103630810 (zma)  LOC103865831 (bra)  LOC103874286 (bra) 
Subcellular
localization
wolf
cyto 5,  chlo 4  (predict for NP_001330408.1)
cyto 5,  chlo 4  (predict for NP_001330409.1)
cyto 5,  chlo 4  (predict for NP_197800.1)
Subcellular
localization
TargetP
chlo 4  (predict for NP_001330408.1)
chlo 4  (predict for NP_001330409.1)
chlo 4  (predict for NP_197800.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00900 Terpenoid backbone biosynthesis 2
Genes directly connected with SIGE on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
11.6 AT3G56290 potassium transporter [detail] 824796
10.5 SQE3 squalene epoxidase 3 [detail] 829932
9.2 AT5G35970 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 833589
9.0 SPA1 SPA (suppressor of phyA-105) protein family [detail] 819242
7.9 AT1G66330 senescence-associated family protein [detail] 842950
7.3 AT5G50100 Putative thiol-disulfide oxidoreductase DCC [detail] 835074
7.2 ECT8 evolutionarily conserved C-terminal region 8 [detail] 844267
6.1 IPK1 inositol-pentakisphosphate 2-kinase 1 [detail] 834292
6.0 AT1G55960 Polyketide cyclase/dehydrase and lipid transport superfamily protein [detail] 842047
Coexpressed
gene list		 [Coexpressed gene list for SIGE]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
249769_at
249769_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
249769_at
249769_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
249769_at
249769_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 832477      
Refseq ID (protein) NP_001330408.1 
NP_001330409.1 
NP_197800.1 


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