[][] ath   AT5G25590 Gene
functional annotation
Function   DNA ligase (DUF630 and DUF632)
GO BP
GO:0071249 [list] [network] cellular response to nitrate  (23 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0016874 [list] [network] ligase activity  (232 genes)  IEA  
KEGG
Protein NP_197941.1 
BLAST NP_197941.1 
Orthologous [Ortholog page] AT1G52320 (ath)LOC4338698 (osa)LOC7458983 (ppo)LOC7471548 (ppo)LOC11432502 (mtr)LOC11433060 (mtr)LOC100241173 (vvi)LOC100259547 (vvi)LOC100382224 (zma)LOC100780700 (gma)LOC100791852 (gma)LOC100807189 (gma)LOC100807597 (gma)LOC101250783 (sly)LOC101255018 (sly)LOC103871216 (bra)LOC103874418 (bra)
Subcellular
localization
wolf
nucl 7,  cyto 3  (predict for NP_197941.1)
Subcellular
localization
TargetP
other 8  (predict for NP_197941.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with AT5G25590 on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
6.3 AT5G48360 Actin-binding FH2 (formin homology 2) family protein [detail] 834889
5.8 AT1G47900 filament-like protein (DUF869) [detail] 841207
5.7 AT3G13510 carboxyl-terminal peptidase, putative (DUF239) [detail] 820553
5.2 HVA22H HVA22-like protein H (ATHVA22H) [detail] 838584
4.9 TRM22 DnaA initiator-associating protein [detail] 843024
4.8 AT1G03270 CBS domain protein with a domain protein (DUF21) [detail] 838595
4.5 AT1G20870 HSP20-like chaperones superfamily protein [detail] 838680
4.0 AT1G33480 RING/U-box superfamily protein [detail] 840242
Coexpressed
gene list
[Coexpressed gene list for AT5G25590]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
246899_at
246899_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
246899_at
246899_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
246899_at
246899_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 832634    
Refseq ID (protein) NP_197941.1 


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