functional annotation |
Function |
cyclin H;1 |
|
GO BP |
GO:1990069 [list] [network] stomatal opening
|
(4 genes)
|
IMP
|
|
GO:0070816 [list] [network] phosphorylation of RNA polymerase II C-terminal domain
|
(15 genes)
|
IBA
|
|
GO:2000070 [list] [network] regulation of response to water deprivation
|
(31 genes)
|
IMP
|
|
GO:0000079 [list] [network] regulation of cyclin-dependent protein serine/threonine kinase activity
|
(52 genes)
|
IBA
|
|
GO:0010119 [list] [network] regulation of stomatal movement
|
(88 genes)
|
IMP
|
|
GO:0009637 [list] [network] response to blue light
|
(98 genes)
|
IMP
|
|
GO:0072593 [list] [network] reactive oxygen species metabolic process
|
(133 genes)
|
IMP
|
|
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II
|
(334 genes)
|
IBA
|
|
GO:0051301 [list] [network] cell division
|
(352 genes)
|
IEA
|
|
GO:0009414 [list] [network] response to water deprivation
|
(361 genes)
|
IMP
|
|
GO:0007049 [list] [network] cell cycle
|
(516 genes)
|
IEA
|
|
GO:0006355 [list] [network] regulation of transcription, DNA-templated
|
(1984 genes)
|
IEP
|
|
|
GO CC |
|
GO MF |
GO:0008353 [list] [network] RNA polymerase II CTD heptapeptide repeat kinase activity
|
(26 genes)
|
IBA
|
|
GO:0016538 [list] [network] cyclin-dependent protein serine/threonine kinase regulator activity
|
(46 genes)
|
IBA
|
|
GO:0004672 [list] [network] protein kinase activity
|
(1017 genes)
|
IDA
|
|
GO:0005515 [list] [network] protein binding
|
(4605 genes)
|
IPI
|
|
|
KEGG |
ath03022 [list] [network] Basal transcription factors (55 genes) |
|
ath03420 [list] [network] Nucleotide excision repair (69 genes) |
|
Protein |
NP_001330468.1
NP_001330469.1
NP_198114.2
|
BLAST |
NP_001330468.1
NP_001330469.1
NP_198114.2
|
Orthologous |
[Ortholog page]
LOC547736 (gma)
LOC4334040 (osa)
LOC11415666 (mtr)
LOC100252789 (vvi)
LOC100283483 (zma)
LOC100800023 (gma)
LOC101246966 (sly)
LOC101248768 (sly)
LOC103837174 (bra)
LOC103854664 (bra)
LOC103874521 (bra)
|
Subcellular localization wolf |
chlo 3,
chlo_mito 3,
mito 1,
nucl 1,
pero 1,
cyto 1,
plas 1,
cysk 1,
cysk_plas 1,
cyto_plas 1
|
(predict for NP_001330468.1)
|
nucl 3,
mito 3,
chlo 2,
cyto 1,
plas 1,
cysk 1,
cysk_plas 1,
cyto_plas 1
|
(predict for NP_001330469.1)
|
mito 4,
nucl 2,
mito_plas 2,
chlo 1,
cyto 1,
cysk_nucl 1,
nucl_plas 1
|
(predict for NP_198114.2)
|
|
Subcellular localization TargetP |
other 5,
mito 4
|
(predict for NP_001330468.1)
|
other 5,
mito 4
|
(predict for NP_001330469.1)
|
other 5,
mito 4
|
(predict for NP_198114.2)
|
|
Gene coexpression |
Network*for coexpressed genes |
KEGG* ID |
Title |
#genes |
Link to the KEGG* map (Multiple genes) |
ath03008 |
Ribosome biogenesis in eukaryotes |
4 |
|
Genes directly connected with CYCH;1 on the network
coex z* |
Locus |
Function* |
Coexpression detail |
Entrez Gene ID* |
8.9 |
MEE49 |
Ribosomal RNA processing Brix domain protein |
[detail] |
828136 |
8.0 |
ATRPAC42 |
DNA-directed RNA polymerase family protein |
[detail] |
842377 |
7.7 |
AT1G63810 |
nucleolar protein |
[detail] |
842684 |
5.6 |
DHDPS1 |
dihydrodipicolinate synthase 1 |
[detail] |
825259 |
|
Coexpressed gene list |
[Coexpressed gene list for CYCH;1]
|
Gene expression |
All samples |
[Expression pattern for all samples]
|
AtGenExpress* (Development) |
246762_at
X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.
|
AtGenExpress* (Stress) |
246762_at
X axis is samples (pdf file), and Y axis is log2-expression.
|
AtGenExpress* (Hormone) |
246762_at
X axis is samples (xls file), and Y axis is log-expression.
|