[][] ath   AT5G27620 Gene
functional annotation
Function   cyclin H;1
GO BP
GO:1990069 [list] [network] stomatal opening  (4 genes)  IMP  
GO:0070816 [list] [network] phosphorylation of RNA polymerase II C-terminal domain  (15 genes)  IBA  
GO:2000070 [list] [network] regulation of response to water deprivation  (31 genes)  IMP  
GO:0000079 [list] [network] regulation of cyclin-dependent protein serine/threonine kinase activity  (52 genes)  IBA  
GO:0010119 [list] [network] regulation of stomatal movement  (88 genes)  IMP  
GO:0009637 [list] [network] response to blue light  (98 genes)  IMP  
GO:0072593 [list] [network] reactive oxygen species metabolic process  (133 genes)  IMP  
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (334 genes)  IBA  
GO:0051301 [list] [network] cell division  (352 genes)  IEA  
GO:0009414 [list] [network] response to water deprivation  (361 genes)  IMP  
GO:0007049 [list] [network] cell cycle  (516 genes)  IEA  
GO:0006355 [list] [network] regulation of transcription, DNA-templated  (1984 genes)  IEP  
GO CC
GO:0070985 [list] [network] transcription factor TFIIK complex  (5 genes)  IBA  
GO:0005675 [list] [network] transcription factor TFIIH holo complex  (15 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA IDA ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IDA  
GO MF
GO:0008353 [list] [network] RNA polymerase II CTD heptapeptide repeat kinase activity  (26 genes)  IBA  
GO:0016538 [list] [network] cyclin-dependent protein serine/threonine kinase regulator activity  (46 genes)  IBA  
GO:0004672 [list] [network] protein kinase activity  (1017 genes)  IDA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath03022 [list] [network] Basal transcription factors (55 genes)
ath03420 [list] [network] Nucleotide excision repair (69 genes)
Protein NP_001330468.1  NP_001330469.1  NP_198114.2 
BLAST NP_001330468.1  NP_001330469.1  NP_198114.2 
Orthologous [Ortholog page] LOC547736 (gma)LOC4334040 (osa)LOC11415666 (mtr)LOC100252789 (vvi)LOC100283483 (zma)LOC100800023 (gma)LOC101246966 (sly)LOC101248768 (sly)LOC103837174 (bra)LOC103854664 (bra)LOC103874521 (bra)
Subcellular
localization
wolf
chlo 3,  chlo_mito 3,  mito 1,  nucl 1,  pero 1,  cyto 1,  plas 1,  cysk 1,  cysk_plas 1,  cyto_plas 1  (predict for NP_001330468.1)
nucl 3,  mito 3,  chlo 2,  cyto 1,  plas 1,  cysk 1,  cysk_plas 1,  cyto_plas 1  (predict for NP_001330469.1)
mito 4,  nucl 2,  mito_plas 2,  chlo 1,  cyto 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_198114.2)
Subcellular
localization
TargetP
other 5,  mito 4  (predict for NP_001330468.1)
other 5,  mito 4  (predict for NP_001330469.1)
other 5,  mito 4  (predict for NP_198114.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 4
Genes directly connected with CYCH;1 on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
8.9 MEE49 Ribosomal RNA processing Brix domain protein [detail] 828136
8.0 ATRPAC42 DNA-directed RNA polymerase family protein [detail] 842377
7.7 AT1G63810 nucleolar protein [detail] 842684
5.6 DHDPS1 dihydrodipicolinate synthase 1 [detail] 825259
Coexpressed
gene list
[Coexpressed gene list for CYCH;1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
246762_at
246762_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
246762_at
246762_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
246762_at
246762_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 832824    
Refseq ID (protein) NP_001330468.1 
NP_001330469.1 
NP_198114.2 


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