[←][→] ath   AT5G27680 Gene
functional annotation
Function   RECQ helicase SIM  
GO BP
GO:0006268 [list] [network] DNA unwinding involved in DNA replication  (18 genes)  IBA  
GO:0032508 [list] [network] DNA duplex unwinding  (29 genes)  IBA IDA  
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (68 genes)  IBA  
GO:0006310 [list] [network] DNA recombination  (143 genes)  IBA  
GO:0006281 [list] [network] DNA repair  (295 genes)  IBA IDA  
GO CC
GO:0005694 [list] [network] chromosome  (348 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IBA  
GO MF
GO:0009378 [list] [network] four-way junction helicase activity  (7 genes)  IBA  
GO:0043138 [list] [network] 3'-5' DNA helicase activity  (11 genes)  IDA  
GO:0005524 [list] [network] ATP binding  (2003 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (4187 genes)  IEA  
KEGG
Protein NP_001330792.1  NP_001330793.1  NP_001330794.1  NP_001330795.1  NP_001330796.1  NP_568499.1 
BLAST NP_001330792.1  NP_001330793.1  NP_001330794.1  NP_001330795.1  NP_001330796.1  NP_568499.1 
Orthologous [Ortholog page] LOC4337828 (osa)  LOC11415668 (mtr)  LOC100257897 (vvi)  LOC100382628 (zma)  LOC100793222 (gma)  LOC101250452 (sly)  LOC103874517 (bra) 
Subcellular
localization
wolf
chlo 4,  nucl 3,  cysk_nucl 2,  cyto 1,  mito 1,  extr 1,  vacu 1  (predict for NP_001330792.1)
nucl 4,  chlo 3,  cysk_nucl 2,  vacu 1,  mito 1,  plas 1,  E.R._vacu 1,  mito_plas 1  (predict for NP_001330793.1)
chlo 4,  nucl 3,  cysk_nucl 2,  cyto 1,  mito 1,  extr 1,  vacu 1  (predict for NP_001330794.1)
chlo 4,  nucl 3,  cysk_nucl 2,  cyto 1,  mito 1,  extr 1,  vacu 1  (predict for NP_001330795.1)
chlo 4,  nucl 3,  cysk_nucl 2,  cyto 1,  mito 1,  extr 1,  vacu 1  (predict for NP_001330796.1)
chlo 4,  nucl 3,  cysk_nucl 2,  cyto 1,  mito 1,  extr 1,  vacu 1  (predict for NP_568499.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001330792.1)
chlo 8  (predict for NP_001330793.1)
other 8  (predict for NP_001330794.1)
other 8  (predict for NP_001330795.1)
other 8  (predict for NP_001330796.1)
other 8  (predict for NP_568499.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 4
Genes directly connected with RECQSIM on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.2 FANCM DEAD/DEAH box RNA helicase family protein [detail] 840448
5.5 MEI1 transcription coactivator [detail] 844068
5.3 AT3G27120 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 822331
4.6 EDA8 Putative membrane lipoprotein [detail] 827417
Coexpressed
gene list		 [Coexpressed gene list for RECQSIM]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
246734_at
246734_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
246734_at
246734_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
246734_at
246734_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 832830      
Refseq ID (protein) NP_001330792.1 
NP_001330793.1 
NP_001330794.1 
NP_001330795.1 
NP_001330796.1 
NP_568499.1 


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