[←][→] ath   At5g27680 Gene
functional annotation
Function   RECQ helicase SIM    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0032508 [list] [network] DNA duplex unwinding  (16 genes)  IDA  
GO:0006281 [list] [network] DNA repair  (203 genes)  IDA  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0043138 [list] [network] 3'-5' DNA helicase activity  (4 genes)  IDA  
KEGG
Protein NP_001330792.1  NP_001330793.1  NP_001330794.1  NP_001330795.1  NP_001330796.1  NP_568499.1 
BLAST NP_001330792.1  NP_001330793.1  NP_001330794.1  NP_001330795.1  NP_001330796.1  NP_568499.1 
Orthologous [Ortholog page] LOC4337828 (osa)  LOC11415668 (mtr)  LOC18098680 (ppo)  LOC100793222 (gma)  LOC101250452 (sly)  LOC103874517 (bra)  LOC123112731 (tae)  LOC123180518 (tae)  LOC123191338 (tae)  LOC123425471 (hvu) 
Subcellular
localization
wolf
chlo 4,  nucl 3,  cysk_nucl 2,  cyto 1,  mito 1,  extr 1,  vacu 1  (predict for NP_001330792.1)
nucl 4,  chlo 3,  cysk_nucl 2,  vacu 1,  mito 1,  plas 1,  E.R._vacu 1,  mito_plas 1  (predict for NP_001330793.1)
chlo 4,  nucl 3,  cysk_nucl 2,  cyto 1,  mito 1,  extr 1,  vacu 1  (predict for NP_001330794.1)
chlo 4,  nucl 3,  cysk_nucl 2,  cyto 1,  mito 1,  extr 1,  vacu 1  (predict for NP_001330795.1)
chlo 4,  nucl 3,  cysk_nucl 2,  cyto 1,  mito 1,  extr 1,  vacu 1  (predict for NP_001330796.1)
chlo 4,  nucl 3,  cysk_nucl 2,  cyto 1,  mito 1,  extr 1,  vacu 1  (predict for NP_568499.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001330792.1)
chlo 8  (predict for NP_001330793.1)
other 8  (predict for NP_001330794.1)
other 8  (predict for NP_001330795.1)
other 8  (predict for NP_001330796.1)
other 8  (predict for NP_568499.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
ath03030 DNA replication 2
ath03430 Mismatch repair 2
Genes directly connected with RECQSIM on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
6.6 FANCM DEAD/DEAH box RNA helicase family protein [detail] 840448
6.0 AT5G52950 LIM domain protein [detail] 835372
5.9 AT3G27120 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 822331
4.7 EDA8 Putative membrane lipoprotein [detail] 827417
Coexpressed
gene list		 [Coexpressed gene list for RECQSIM]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
246734_at
246734_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
246734_at
246734_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
246734_at
246734_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 832830      
Refseq ID (protein) NP_001330792.1 
NP_001330793.1 
NP_001330794.1 
NP_001330795.1 
NP_001330796.1 
NP_568499.1 


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