ATTED-II : GeneID search result

[←][→] ath AT5G28030 Gene

functional annotation

Function

L-cysteine desulfhydrase 1

GO BP

GO:0080145 [list] [network] cysteine homeostasis	(1 genes)	IMP
GO:1990170 [list] [network] stress response to cadmium ion	(9 genes)	IMP
GO:0006535 [list] [network] cysteine biosynthetic process from serine	(12 genes)	IBA
GO:0006979 [list] [network] response to oxidative stress	(442 genes)	IMP

GO CC

GO:0009507 [list] [network] chloroplast	(5095 genes)	ISM
GO:0005737 [list] [network] cytoplasm	(14855 genes)	IBA ISM

GO MF

GO:0080146 [list] [network] L-cysteine desulfhydrase activity	(2 genes)	IDA
GO:0004124 [list] [network] cysteine synthase activity	(9 genes)	IBA
GO:0030170 [list] [network] pyridoxal phosphate binding	(84 genes)	IBA

KEGG

ath00270 [list] [network] Cysteine and methionine metabolism (121 genes)

ath00920 [list] [network] Sulfur metabolism (42 genes)

ath01200 [list] [network] Carbon metabolism (273 genes)

ath01230 [list] [network] Biosynthesis of amino acids (251 genes)

Protein

NP_001330586.1 NP_001330587.1 NP_001330588.1 NP_198155.1 NP_974843.1

BLAST

NP_001330586.1 NP_001330587.1 NP_001330588.1 NP_198155.1 NP_974843.1

Orthologous

[Ortholog page] LOC542438 (zma) LOC547631 (gma) OASB (ath) CYSD1 (ath) OASC (ath) OASA1 (ath) CYSD2 (ath) LOC4327819 (osa) LOC4334101 (osa) LOC4352839 (osa) LOC11410728 (mtr) LOC11410729 (mtr) LOC11441090 (mtr) LOC11443458 (mtr) LOC11445174 (mtr) LOC25484655 (mtr) LOC25485205 (mtr) OAS-TL1 (gma) OAS-TL2 (gma) OAS-TL6 (gma) OAS-TL4 (gma) OAS-TL7 (gma) LOC100233046 (vvi) LOC100247043 (vvi) LOC100252170 (vvi) LOC100264196 (vvi) LOC100272829 (zma) LOC100280321 (zma) LOC100775420 (gma) LOC100794958 (gma) LOC100804065 (gma) LOC100815330 (gma) LOC100818242 (gma) LOC100854639 (vvi) LOC100854804 (vvi) LOC101244415 (sly) LOC101246283 (sly) LOC101246567 (sly) LOC101254617 (sly) OASA4 (bra) LOC103837317 (bra) LOC103837318 (bra) LOC103854642 (bra) LOC103859070 (bra) LOC103862931 (bra) LOC103866104 (bra) LOC103866743 (bra) LOC103871539 (bra) LOC109121422 (vvi)

Subcellular
localization
wolf

nucl 4, cyto 4, cyto_nucl 4	(predict for NP_001330586.1)
cyto 6, cysk 3, cyto_pero 3, cyto_E.R. 3, cyto_plas 3	(predict for NP_001330587.1)
cyto 6, cysk 3, cyto_pero 3, cyto_E.R. 3, cyto_plas 3	(predict for NP_001330588.1)
cyto 6, cysk 3, cyto_pero 3, cyto_E.R. 3, cyto_plas 3	(predict for NP_198155.1)
cyto 6, cysk 3, cyto_pero 3, cyto_E.R. 3, cyto_plas 3	(predict for NP_974843.1)

Subcellular
localization
TargetP

other 9	(predict for NP_001330586.1)
other 9	(predict for NP_001330587.1)
other 9	(predict for NP_001330588.1)
other 9	(predict for NP_198155.1)
other 9	(predict for NP_974843.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00906	Carotenoid biosynthesis	2
ath01200	Carbon metabolism	2
ath01230	Biosynthesis of amino acids	2

Genes directly connected with DES1 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
4.4	NAS3	nicotianamine synthase 3	[detail]	837444
4.4	CYP707A4	cytochrome P450, family 707, subfamily A, polypeptide 4	[detail]	821461
4.2	NCED4	nine-cis-epoxycarotenoid dioxygenase 4	[detail]	827655

Coexpressed
gene list

[Coexpressed gene list for DES1]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

246700_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

246700_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

246700_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	832873
Refseq ID (protein)	NP_001330586.1
	NP_001330587.1
	NP_001330588.1
	NP_198155.1
	NP_974843.1

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