[←][→] ath   At5g28050 Gene
functional annotation
Function   Cytidine/deoxycytidylate deaminase family protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0002100 [list] [network] tRNA wobble adenosine to inosine editing  (3 genes)  IEA  
GO:0006152 [list] [network] purine nucleoside catabolic process  (5 genes)  IDA IMP  
GO CC
GO:0005829 [list] [network] cytosol  (2559 genes)  HDA IDA  
GO:0005576 [list] [network] extracellular region  (3154 genes)  ISM  
GO:0009536 [list] [network] plastid  (5425 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (13880 genes)  IDA ISM  
GO MF
GO:0047974 [list] [network] guanosine deaminase activity  (1 genes)  IDA  
GO:0008251 [list] [network] tRNA-specific adenosine deaminase activity  (6 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (429 genes)  IEA  
KEGG
Protein NP_001031959.1  NP_001330272.1  NP_198157.1 
BLAST NP_001031959.1  NP_001330272.1  NP_198157.1 
Orthologous [Ortholog page] AT3G05300 (ath)  LOC4334690 (osa)  LOC4342824 (osa)  LOC7496489 (ppo)  LOC11407974 (mtr)  LOC11408453 (mtr)  LOC11423855 (mtr)  LOC18098932 (ppo)  LOC18110983 (ppo)  LOC100305493 (gma)  LOC100305603 (gma)  LOC100500436 (gma)  LOC100527067 (gma)  LOC100816644 (gma)  LOC100820230 (gma)  LOC101244906 (sly)  LOC103859090 (bra)  LOC103874566 (bra)  LOC123087782 (tae)  LOC123114146 (tae)  LOC123117609 (tae)  LOC123123639 (tae)  LOC123394918 (hvu)  LOC123394919 (hvu) 
Subcellular
localization
wolf
mito 5,  cyto 3,  chlo 2  (predict for NP_001031959.1)
mito 7,  chlo 3  (predict for NP_001330272.1)
cyto 9  (predict for NP_198157.1)
Subcellular
localization
TargetP
other 5,  mito 3,  scret 3  (predict for NP_001031959.1)
scret 5  (predict for NP_001330272.1)
other 9  (predict for NP_198157.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00280 Valine, leucine and isoleucine degradation 4
ath00250 Alanine, aspartate and glutamate metabolism 3
ath04626 Plant-pathogen interaction 2
ath00640 Propanoate metabolism 2
ath01200 Carbon metabolism 2
Genes directly connected with AT5G28050 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
5.8 ALDH6B2 aldehyde dehydrogenase 6B2 [detail] 815903
5.4 AT1G18270 ketose-bisphosphate aldolase class-II family protein [detail] 838407
5.3 AT3G51730 saposin B domain-containing protein [detail] 824336
5.3 CDPK2 calcium-dependent protein kinase 2 [detail] 840471
5.2 bHLH104 basic helix-loop-helix (bHLH) DNA-binding superfamily protein [detail] 827086
Coexpressed
gene list		 [Coexpressed gene list for AT5G28050]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
246702_at
246702_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
246702_at
246702_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
246702_at
246702_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 832875      
Refseq ID (protein) NP_001031959.1 
NP_001330272.1 
NP_198157.1 


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