[←][→] ath   At5g37890 Gene
functional annotation
Function   Protein with RING/U-box and TRAF-like domain    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0009411 [list] [network] response to UV  (126 genes)  IEP  
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (230 genes)  IEA  
GO:0016567 [list] [network] protein ubiquitination  (434 genes)  IDA IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (13880 genes)  IEA  
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (78 genes)  IDA  
GO:0008270 [list] [network] zinc ion binding  (429 genes)  IEA  
KEGG ath04120 [list] [network] Ubiquitin mediated proteolysis (155 genes)
Protein NP_198605.2 
BLAST NP_198605.2 
Orthologous [Ortholog page] AT5G37870 (ath)  AT5G37900 (ath)  AT5G37910 (ath)  AT5G37930 (ath)  AT5G62800 (ath)  AT1G66610 (ath)  AT1G66620 (ath)  AT1G66630 (ath)  AT1G66650 (ath)  AT1G66660 (ath)  LOC4340862 (osa)  LOC7493536 (ppo)  LOC7494532 (ppo)  LOC9269391 (osa)  LOC11418747 (mtr)  LOC11425847 (mtr)  LOC11432566 (mtr)  LOC11436875 (mtr)  LOC11437704 (mtr)  LOC11445862 (mtr)  LOC18099412 (ppo)  LOC18106453 (ppo)  LOC25483069 (mtr)  LOC25483070 (mtr)  LOC25493350 (mtr)  LOC25499082 (mtr)  LOC100778869 (gma)  LOC100797881 (gma)  LOC101256260 (sly)  LOC101256849 (sly)  LOC101262084 (sly)  LOC101262896 (sly)  LOC102662420 (gma)  LOC103829298 (bra)  LOC103831113 (bra)  LOC103831115 (bra)  LOC103841498 (bra)  LOC103850097 (bra)  LOC103857391 (bra)  LOC103860069 (bra)  LOC103863762 (bra)  LOC103864155 (bra)  LOC103864598 (bra)  LOC103867898 (bra)  LOC103872071 (bra)  LOC104646203 (sly)  LOC107275945 (osa)  LOC107276150 (osa)  LOC107276602 (osa)  LOC107278743 (osa)  LOC109119263 (sly)  LOC109119702 (sly)  LOC112937424 (osa)  LOC120578306 (mtr)  LOC120580680 (mtr)  LOC120580681 (mtr)  LOC123039382 (tae)  LOC123056627 (tae)  LOC123056632 (tae)  LOC123056639 (tae)  LOC123056700 (tae)  LOC123056701 (tae)  LOC123056703 (tae)  LOC123057602 (tae)  LOC123057689 (tae)  LOC123059891 (tae)  LOC123059895 (tae)  LOC123059896 (tae)  LOC123064409 (tae)  LOC123064410 (tae)  LOC123064418 (tae)  LOC123064420 (tae)  LOC123064421 (tae)  LOC123064437 (tae)  LOC123064439 (tae)  LOC123064533 (tae)  LOC123064536 (tae)  LOC123064540 (tae)  LOC123064565 (tae)  LOC123064567 (tae)  LOC123064568 (tae)  LOC123064573 (tae)  LOC123064574 (tae)  LOC123067172 (tae)  LOC123067176 (tae)  LOC123067177 (tae)  LOC123067213 (tae)  LOC123068397 (tae)  LOC123073721 (tae)  LOC123073723 (tae)  LOC123073727 (tae)  LOC123073728 (tae)  LOC123073734 (tae)  LOC123073737 (tae)  LOC123076027 (tae)  LOC123076029 (tae)  LOC123076620 (tae)  LOC123076854 (tae)  LOC123076856 (tae)  LOC123076860 (tae)  LOC123093866 (tae)  LOC123099091 (tae)  LOC123106050 (tae)  LOC123107107 (tae)  LOC123164648 (tae)  LOC123177068 (tae)  LOC123177102 (tae)  LOC123177454 (tae)  LOC123396121 (hvu)  LOC123439208 (hvu)  LOC123439211 (hvu)  LOC123439215 (hvu)  LOC123441287 (hvu)  LOC123441292 (hvu)  LOC123441293 (hvu)  LOC123441295 (hvu)  LOC123441302 (hvu)  LOC123449949 (hvu)  LOC123450607 (hvu) 
Subcellular
localization
wolf
nucl 7,  cyto 1,  chlo 1,  extr 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_198605.2)
Subcellular
localization
TargetP
other 5,  chlo 3  (predict for NP_198605.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
Genes directly connected with AT5G37890 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
5.5 AT1G62150 Mitochondrial transcription termination factor family protein [detail] 842511
4.8 AT5G11010 Pre-mRNA cleavage complex II protein family [detail] 830968
4.8 RDM1 RNA-DIRECTED DNA METHYLATION 1 [detail] 821839
Coexpressed
gene list		 [Coexpressed gene list for AT5G37890]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
249592_at
249592_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
249592_at
249592_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
249592_at
249592_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 833768      
Refseq ID (protein) NP_198605.2 


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