[][] ath   AT5G38470 Gene
functional annotation
Function   Rad23 UV excision repair protein family
GO BP
GO:0006289 [list] [network] nucleotide-excision repair  (46 genes)  IEA  
GO:0009409 [list] [network] response to cold  (411 genes)  IEP  
GO CC
GO:0005829 [list] [network] cytosol  (3506 genes)  HDA IDA  
GO:0009536 [list] [network] plastid  (5519 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IDA  
GO MF
GO:0070628 [list] [network] proteasome binding  (16 genes)  IDA  
GO:0031593 [list] [network] polyubiquitin modification-dependent protein binding  (23 genes)  IDA  
GO:0003684 [list] [network] damaged DNA binding  (40 genes)  IEA  
GO:0043130 [list] [network] ubiquitin binding  (51 genes)  IDA  
KEGG ath03420 [list] [network] Nucleotide excision repair (69 genes)
ath04141 [list] [network] Protein processing in endoplasmic reticulum (211 genes)
Protein NP_001078680.1  NP_198663.1 
BLAST NP_001078680.1  NP_198663.1 
Orthologous [Ortholog page] RAD23C (ath)LOC4340699 (osa)LOC4345632 (osa)LOC4347014 (osa)LOC7477421 (ppo)LOC7488352 (ppo)LOC25485511 (mtr)LOC25499820 (mtr)LOC100191313 (zma)LOC100244610 (vvi)LOC100245820 (vvi)LOC100274222 (zma)LOC100282762 (zma)LOC100809066 (gma)LOC100814162 (gma)LOC100817821 (gma)LOC100818012 (gma)RAD23d (sly)LOC101249452 (sly)LOC101258124 (sly)LOC103850114 (bra)LOC103858967 (bra)LOC103863786 (bra)
Subcellular
localization
wolf
cyto 4,  chlo 4,  mito 1  (predict for NP_001078680.1)
cyto 4,  chlo 2,  cyto_E.R. 2,  cyto_plas 2  (predict for NP_198663.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001078680.1)
other 9  (predict for NP_198663.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 11
ath04141 Protein processing in endoplasmic reticulum 4
Genes directly connected with RAD23D on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
11.8 AT2G17190 ubiquitin family protein [detail] 816224
10.2 PBA1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein [detail] 829257
9.2 EMB2719 PAM domain (PCI/PINT associated module) protein [detail] 838609
8.2 UFD1 ubiquitin fusion degradation 1 [detail] 816666
7.7 GRF5 general regulatory factor 5 [detail] 831462
7.5 SKP1 S phase kinase-associated protein 1 [detail] 843928
7.1 AT3G53970 proteasome inhibitor-like protein [detail] 824564
6.8 NF-YC9 nuclear factor Y, subunit C9 [detail] 837417
6.7 AT1G14570 UBX domain-containing protein [detail] 838019
6.3 PBS2 cysteine and histidine-rich domain-containing protein RAR1 [detail] 835244
5.2 AT3G20800 Cell differentiation, Rcd1-like protein [detail] 821628
4.9 UBQ4 ubiquitin 4 [detail] 832184
Coexpressed
gene list
[Coexpressed gene list for RAD23D]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
249512_at
249512_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
249512_at
249512_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
249512_at
249512_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 833835    
Refseq ID (protein) NP_001078680.1 
NP_198663.1 


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