[←][→] ath   AT5G38720 Gene
functional annotation
Function   ribosomal RNA-processing 7 protein  
GO BP
GO:0000028 [list] [network] ribosomal small subunit assembly  (26 genes)  IMP  
GO:0006364 [list] [network] rRNA processing  (276 genes)  IMP  
GO CC
GO:0005730 [list] [network] nucleolus  (477 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  ISM  
GO MF
KEGG ath03008 [list] [network] Ribosome biogenesis in eukaryotes (98 genes)
Protein NP_001332268.1  NP_001332269.1  NP_198688.2 
BLAST NP_001332268.1  NP_001332269.1  NP_198688.2 
Orthologous [Ortholog page] LOC4330604 (osa)  LOC7468378 (ppo)  LOC11422352 (mtr)  LOC11426579 (mtr)  LOC25492214 (mtr)  LOC100193550 (zma)  LOC100265155 (vvi)  LOC100776399 (gma)  LOC100802650 (gma)  LOC101259128 (sly)  LOC101268734 (sly)  LOC103863799 (bra) 
Subcellular
localization
wolf
nucl 7,  plas 1,  E.R._plas 1  (predict for NP_001332268.1)
nucl 8,  plas 1  (predict for NP_001332269.1)
nucl 9  (predict for NP_198688.2)
Subcellular
localization
TargetP
scret 9  (predict for NP_001332268.1)
other 8  (predict for NP_001332269.1)
other 8  (predict for NP_198688.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 4
Genes directly connected with AT5G38720 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
11.0 AT3G01160 pre-rRNA-processing ESF1-like protein [detail] 820504
11.0 AT5G66540 U3 small nucleolar ribonucleoprotein [detail] 836786
10.0 AT5G54910 DEA(D/H)-box RNA helicase family protein [detail] 835582
8.3 AT1G19990 nucleolin [detail] 838588
6.6 AT3G20430 phosphorylated adapter RNA export-like protein [detail] 821588
5.7 AT4G20340 Transcription factor TFIIE, alpha subunit [detail] 827782
4.5 AT4G19550 zinc ion binding / transcription regulator [detail] 827697
Coexpressed
gene list		 [Coexpressed gene list for AT5G38720]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
249528_at
249528_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
249528_at
249528_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
249528_at
249528_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 833863      
Refseq ID (protein) NP_001332268.1 
NP_001332269.1 
NP_198688.2 


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