[←][→] ath   AT5G40890 Gene
functional annotation
Function   chloride channel A  
GO BP
GO:0006821 [list] [network] chloride transport  (7 genes)  IDA  
GO:0015706 [list] [network] nitrate transport  (32 genes)  IDA  
GO:0010167 [list] [network] response to nitrate  (37 genes)  IMP  
GO:0034765 [list] [network] regulation of ion transmembrane transport  (43 genes)  IEA  
GO CC
GO:0034707 [list] [network] chloride channel complex  (8 genes)  IEA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO:0005622 [list] [network] intracellular  (21658 genes)  TAS  
GO MF
GO:0005247 [list] [network] voltage-gated chloride channel activity  (8 genes)  IEA  
GO:0005253 [list] [network] anion channel activity  (20 genes)  ISS  
GO:0015112 [list] [network] nitrate transmembrane transporter activity  (25 genes)  IDA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_001031990.1  NP_198905.1 
BLAST NP_001031990.1  NP_198905.1 
Orthologous [Ortholog page] CLC1 (gma)  CLC-B (ath)  LOC4352132 (osa)  LOC7456226 (ppo)  LOC11427694 (mtr)  LOC25497844 (mtr)  LOC100260066 (vvi)  LOC100502532 (zma)  LOC101244821 (sly)  LOC101249604 (sly)  LOC103850199 (bra)  LOC103854263 (bra)  LOC103864237 (bra)  LOC103875243 (bra) 
Subcellular
localization
wolf
plas 6,  E.R. 1,  chlo 1,  extr 1,  vacu 1,  golg 1,  cyto_E.R. 1  (predict for NP_001031990.1)
plas 6,  E.R. 3  (predict for NP_198905.1)
Subcellular
localization
TargetP
scret 8  (predict for NP_001031990.1)
other 9  (predict for NP_198905.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with CLC-A on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.0 AT1G49500 transcription initiation factor TFIID subunit 1b-like protein [detail] 841374
5.6 CIPK3 CBL-interacting protein kinase 3 [detail] 817240
5.1 AT1G78850 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein [detail] 844222
4.9 ATBETAFRUCT4 Glycosyl hydrolases family 32 protein [detail] 837777
Coexpressed
gene list		 [Coexpressed gene list for CLC-A]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
249327_at
249327_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
249327_at
249327_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
249327_at
249327_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 834090      
Refseq ID (protein) NP_001031990.1 
NP_198905.1 


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