ATTED-II : GeneID search result

[←][→] ath AT5G41700 Gene

functional annotation

Function

ubiquitin conjugating enzyme 8

GO BP

GO:0009960 [list] [network] endosperm development	(34 genes)	IEP
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process	(436 genes)	IBA IDA TAS
GO:0016567 [list] [network] protein ubiquitination	(624 genes)	IEA

GO CC

GO:0005634 [list] [network] nucleus	(10793 genes)	IDA ISM
GO:0005737 [list] [network] cytoplasm	(14855 genes)	IDA

GO MF

GO:0061631 [list] [network] ubiquitin conjugating enzyme activity	(37 genes)	IBA
GO:0004842 [list] [network] ubiquitin-protein transferase activity	(434 genes)	IDA ISS
GO:0005524 [list] [network] ATP binding	(2003 genes)	IEA
GO:0005515 [list] [network] protein binding	(4605 genes)	IPI

KEGG

Protein

NP_001190447.1 NP_568595.2 NP_851114.1 NP_851115.1 NP_851116.1

BLAST

NP_001190447.1 NP_568595.2 NP_851114.1 NP_851115.1 NP_851116.1

Orthologous

[Ortholog page] LOC541665 (zma) LOC547652 (gma) UBC29 (ath) UBC11 (ath) UBC9 (ath) UBC10 (ath) UBC30 (ath) LOC4327162 (osa) LOC4327450 (osa) LOC4327451 (osa) LOC4328114 (osa) LOC4328940 (osa) LOC4337331 (osa) LOC4341133 (osa) LOC4346639 (osa) LOC7467425 (ppo) LOC7470402 (ppo) LOC7472487 (ppo) LOC7479274 (ppo) LOC7494655 (ppo) LOC7497821 (ppo) LOC11420397 (mtr) LOC11432845 (mtr) LOC11436401 (mtr) LOC11437634 (mtr) LOC11443623 (mtr) LOC25501549 (mtr) LOC100192585 (zma) LOC100192813 (zma) LOC100232965 (vvi) LOC100241514 (vvi) LOC100248397 (vvi) LOC100248604 (vvi) LOC100251531 (vvi) LOC100262210 (vvi) LOC100280571 (zma) LOC100281830 (zma) LOC100285413 (zma) LOC100286223 (zma) UBC3 (sly) UBC (sly) LOC100305945 (gma) LOC100499741 (gma) LOC100499824 (gma) LOC100499891 (gma) LOC100500665 (gma) LOC100527105 (gma) LOC100777678 (gma) LOC100783492 (gma) LOC100787053 (gma) LOC100802703 (gma) LOC100805577 (gma) LOC100806349 (gma) LOC100809895 (gma) LOC100817810 (gma) LOC100818920 (gma) UBC11 (sly) LOC101249087 (sly) LOC101250739 (sly) LOC101252287 (sly) LOC101254567 (sly) LOC101257090 (sly) LOC101260872 (sly) LOC101264951 (sly) LOC101265051 (sly) LOC101265499 (sly) LOC103651070 (zma) LOC103654927 (zma) LOC103834781 (bra) LOC103838220 (bra) LOC103844808 (bra) LOC103846025 (bra) LOC103848719 (bra) LOC103851847 (bra) LOC103852040 (bra) LOC103857087 (bra) LOC103859333 (bra) LOC103867752 (bra) LOC103870601 (bra)

Subcellular
localization
wolf

mito 4, cyto_nucl 2, cyto_mito 2, mito_plas 2, nucl 1, cyto 1	(predict for NP_001190447.1)
mito 4, cyto 2, mito_plas 2, chlo 1, nucl 1, cyto_pero 1, cyto_plas 1	(predict for NP_568595.2)
mito 4, cyto_nucl 2, cyto_mito 2, mito_plas 2, nucl 1, cyto 1	(predict for NP_851114.1)
mito 4, cyto_nucl 2, cyto_mito 2, mito_plas 2, nucl 1, cyto 1	(predict for NP_851115.1)
nucl 6, cyto_nucl 4, chlo 1, cyto 1, chlo_mito 1	(predict for NP_851116.1)

Subcellular
localization
TargetP

other 8	(predict for NP_001190447.1)
other 8	(predict for NP_568595.2)
other 8	(predict for NP_851114.1)
other 8	(predict for NP_851115.1)
other 8	(predict for NP_851116.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with UBC8 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
9.5	DI19	drought-induced 19	[detail]	842081
8.9	TCTP	translationally controlled tumor protein	[detail]	820916
8.7	ARFA1E	ADP-ribosylation factor A1E	[detail]	825402
8.5	UBC28	ubiquitin-conjugating enzyme 28	[detail]	842728
5.4	AT3G42150	transmembrane protein	[detail]	823187
3.9	AT5G41690	RNA-binding (RRM/RBD/RNP motifs) family protein	[detail]	834172
3.7	AT5G18850	Low-density receptor-like protein	[detail]	832003

Coexpressed
gene list

[Coexpressed gene list for UBC8]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

249265_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

249265_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

249265_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	834173
Refseq ID (protein)	NP_001190447.1
	NP_568595.2
	NP_851114.1
	NP_851115.1
	NP_851116.1

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