[][] ath   AT5G42200 Gene
functional annotation
Function   RING/U-box superfamily protein
GO BP
GO:0071456 [list] [network] cellular response to hypoxia  (238 genes)  HEP  
GO:0016567 [list] [network] protein ubiquitination  (624 genes)  IDA IEA  
GO CC
GO:0016021 [list] [network] integral component of membrane  (4803 genes)  IEA  
GO MF
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (434 genes)  IDA  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
KEGG
Protein NP_199035.1 
BLAST NP_199035.1 
Orthologous [Ortholog page] LOC7490624 (ppo)LOC11432144 (mtr)LOC100267702 (vvi)LOC100776003 (gma)LOC100780203 (gma)LOC100811160 (gma)LOC100817919 (gma)LOC101245541 (sly)LOC101249449 (sly)LOC103832296 (bra)LOC104882588 (vvi)
Subcellular
localization
wolf
chlo 8,  vacu 1  (predict for NP_199035.1)
Subcellular
localization
TargetP
other 7  (predict for NP_199035.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with AT5G42200 on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
6.6 AT5G25240 stress induced protein [detail] 832595
6.4 AT1G74940 cyclin-dependent kinase, putative (DUF581) [detail] 843833
6.1 AT2G35470 ribosome maturation factor [detail] 818112
5.2 AT5G01200 Duplicated homeodomain-like superfamily protein [detail] 831676
4.6 AT5G54980 Uncharacterized protein family (UPF0497) [detail] 835589
4.3 AT4G28150 hypothetical protein (DUF789) [detail] 828930
Coexpressed
gene list
[Coexpressed gene list for AT5G42200]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
249234_at
249234_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
249234_at
249234_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
249234_at
249234_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 834225    
Refseq ID (protein) NP_199035.1 


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