[←][→] ath   At5g42270 Gene
functional annotation
Function   FtsH extracellular protease family      
GO BP
GO:0010304 [list] [network] PSII associated light-harvesting complex II catabolic process  (8 genes)  TAS  
GO:0010205 [list] [network] photoinhibition  (11 genes)  IMP  
GO:0048564 [list] [network] photosystem I assembly  (16 genes)  IMP  
GO:0030163 [list] [network] protein catabolic process  (321 genes)  IDA  
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (315 genes)  HDA IDA  
GO:0009534 [list] [network] chloroplast thylakoid  (415 genes)  HDA  
GO:0009579 [list] [network] thylakoid  (509 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (582 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5004 genes)  HDA IDA ISM  
GO:0009536 [list] [network] plastid  (5425 genes)  HDA  
GO MF
GO:0004176 [list] [network] ATP-dependent peptidase activity  (16 genes)  ISS  
GO:0016887 [list] [network] ATP hydrolysis activity  (115 genes)  IDA  
GO:0003729 [list] [network] mRNA binding  (1535 genes)  IDA  
KEGG
Protein NP_568604.1 
BLAST NP_568604.1 
Orthologous [Ortholog page] FTSH1 (ath)  LOC4342113 (osa)  LOC7494681 (ppo)  LOC7496874 (ppo)  LOC25490290 (mtr)  LOC100037730 (sly)  LOC100803824 (gma)  LOC100807408 (gma)  LOC103831194 (bra)  LOC123149765 (tae)  LOC123162610 (tae)  LOC123168509 (tae)  LOC123408493 (hvu) 
Subcellular
localization
wolf
chlo 10  (predict for NP_568604.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_568604.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00906 Carotenoid biosynthesis 2
Genes directly connected with VAR1 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
16.0 FTSH1 FTSH protease 1 [detail] 841447
13.3 VAR2 FtsH extracellular protease family [detail] 817646
10.5 FTSH8 FTSH protease 8 [detail] 837154
10.4 PREP1 presequence protease 1 [detail] 821451
10.2 AT4G36530 alpha/beta-Hydrolases superfamily protein [detail] 829805
9.7 MSRB1 methionine sulfoxide reductase B 1 [detail] 841804
8.4 ZDS zeta-carotene desaturase [detail] 819647
6.9 AT5G06220 LETM1-like protein [detail] 830509
Coexpressed
gene list		 [Coexpressed gene list for VAR1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
249244_at
249244_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
249244_at
249244_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
249244_at
249244_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 834232      
Refseq ID (protein) NP_568604.1 


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