[←][→] ath   AT5G42270 Gene
functional annotation
Function   FtsH extracellular protease family  
GO BP
GO:0010304 [list] [network] PSII associated light-harvesting complex II catabolic process  (8 genes)  IBA TAS  
GO:0010205 [list] [network] photoinhibition  (13 genes)  IBA IMP  
GO:0010206 [list] [network] photosystem II repair  (14 genes)  IBA  
GO:0048564 [list] [network] photosystem I assembly  (16 genes)  IMP  
GO:0010027 [list] [network] thylakoid membrane organization  (49 genes)  IBA  
GO:0030163 [list] [network] protein catabolic process  (603 genes)  IDA  
GO:0006508 [list] [network] proteolysis  (901 genes)  IBA  
GO:0007275 [list] [network] multicellular organism development  (2714 genes)  IEA  
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (373 genes)  IBA IDA  
GO:0009534 [list] [network] chloroplast thylakoid  (474 genes)  IDA  
GO:0009579 [list] [network] thylakoid  (543 genes)  IDA  
GO:0009941 [list] [network] chloroplast envelope  (666 genes)  IBA IDA  
GO:0016021 [list] [network] integral component of membrane  (4803 genes)  IEA  
GO:0009507 [list] [network] chloroplast  (5095 genes)  IDA ISM  
GO:0009536 [list] [network] plastid  (5519 genes)  HDA  
GO MF
GO:0004176 [list] [network] ATP-dependent peptidase activity  (30 genes)  IBA ISS  
GO:0004222 [list] [network] metalloendopeptidase activity  (48 genes)  IEA  
GO:0016887 [list] [network] ATPase activity  (507 genes)  IDA  
GO:0005524 [list] [network] ATP binding  (2003 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
KEGG
Protein NP_568604.1 
BLAST NP_568604.1 
Orthologous [Ortholog page] FTSH1 (ath)  LOC4342113 (osa)  LOC7494681 (ppo)  LOC7496874 (ppo)  LOC25490290 (mtr)  LOC100037730 (sly)  LOC100250509 (vvi)  LOC100502422 (zma)  LOC100803824 (gma)  LOC100807408 (gma)  LOC103831194 (bra) 
Subcellular
localization
wolf
chlo 10  (predict for NP_568604.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_568604.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00906 Carotenoid biosynthesis 2
Genes directly connected with VAR1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
15.3 FTSH1 FTSH protease 1 [detail] 841447
12.3 VAR2 FtsH extracellular protease family [detail] 817646
9.8 FTSH8 FTSH protease 8 [detail] 837154
9.0 HCF173 high chlorophyll fluorescence phenotype 173 [detail] 838243
8.8 PREP1 presequence protease 1 [detail] 821451
8.6 AT4G36530 alpha/beta-Hydrolases superfamily protein [detail] 829805
8.3 ZDS zeta-carotene desaturase [detail] 819647
Coexpressed
gene list		 [Coexpressed gene list for VAR1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
249244_at
249244_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
249244_at
249244_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
249244_at
249244_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 834232      
Refseq ID (protein) NP_568604.1 


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