[←][→] ath   AT5G43130 Gene
functional annotation
Function   TBP-associated factor 4  
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (206 genes)  IBA  
GO CC
GO:0005669 [list] [network] transcription factor TFIID complex  (19 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0008134 [list] [network] transcription factor binding  (173 genes)  IBA  
GO:0003677 [list] [network] DNA binding  (2280 genes)  IBA  
KEGG ath03022 [list] [network] Basal transcription factors (55 genes)
Protein NP_001190458.1  NP_001330539.1  NP_199127.3 
BLAST NP_001190458.1  NP_001330539.1  NP_199127.3 
Orthologous [Ortholog page] TAF4B (ath)  LOC4333214 (osa)  LOC7462851 (ppo)  LOC7497338 (ppo)  LOC25489943 (mtr)  LOC25489947 (mtr)  LOC25489951 (mtr)  LOC100252311 (vvi)  LOC100278950 (zma)  LOC100783067 (gma)  LOC100795389 (gma)  LOC100797127 (gma)  LOC100798514 (gma)  LOC101262209 (sly)  LOC103827992 (bra)  LOC103829049 (bra)  LOC103848801 (bra) 
Subcellular
localization
wolf
nucl 9  (predict for NP_001190458.1)
nucl 9  (predict for NP_001330539.1)
nucl 9  (predict for NP_199127.3)
Subcellular
localization
TargetP
other 8  (predict for NP_001190458.1)
other 8  (predict for NP_001330539.1)
other 8  (predict for NP_199127.3)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
Genes directly connected with TAF4 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
10.6 RRC1 RNA recognition motif (RRM)-containing protein [detail] 832577
7.7 AT4G21660 proline-rich spliceosome-associated (PSP) family protein [detail] 828253
7.7 AT3G06670 binding protein [detail] 819852
5.8 CDPK19 calcium-dependent protein kinase 19 [detail] 832065
Coexpressed
gene list		 [Coexpressed gene list for TAF4]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
249133_at
249133_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
249133_at
249133_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
249133_at
249133_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 834330      
Refseq ID (protein) NP_001190458.1 
NP_001330539.1 
NP_199127.3 


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