ATTED-II : GeneID search result

[←][→] ath At5g46410 Gene

functional annotation

Function

SCP1-like small phosphatase 4

GO BP

GO:0006470 [list] [network] protein dephosphorylation

(50 genes)

IDA

GO CC

GO:0005634 [list] [network] nucleus

(10305 genes)

IDA ISM

GO MF

GO:0008420 [list] [network] RNA polymerase II CTD heptapeptide repeat phosphatase activity

(4 genes)

IDA

KEGG

Protein

NP_001119383.1 NP_001332006.1 NP_199453.2

BLAST

NP_001119383.1 NP_001332006.1 NP_199453.2

Orthologous

[Ortholog page] SSP4b (ath) LOC4326666 (osa) LOC7471836 (ppo) LOC11411659 (mtr) LOC18095283 (ppo) LOC100786602 (gma) LOC100799803 (gma) LOC101254863 (sly) LOC103827734 (bra) LOC123061544 (tae) LOC123070180 (tae) LOC123078623 (tae) LOC123443925 (hvu)

Subcellular
localization
wolf

cyto 4, nucl 3, chlo 1, mito 1, cysk 1, chlo_mito 1, golg_plas 1	(predict for NP_001119383.1)
cyto 4, nucl 3, chlo 1, mito 1, cysk 1, chlo_mito 1, golg_plas 1	(predict for NP_001332006.1)
cyto 4, nucl 3, chlo 1, mito 1, cysk 1, chlo_mito 1, golg_plas 1	(predict for NP_199453.2)

Subcellular
localization
TargetP

other 6	(predict for NP_001119383.1)
other 6	(predict for NP_001332006.1)
other 6	(predict for NP_199453.2)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with SSP4 on the network
coex z^*	Locus	Function^*	CoexViewer	Entrez Gene ID^*
12.1	SSP4b	SCP1-like small phosphatase 4b	[detail]	827539
6.9	AT4G32440	Plant Tudor-like RNA-binding protein	[detail]	829379
6.1	AT5G63370	Protein kinase superfamily protein	[detail]	836456
5.3	AT4G36648		[detail]	5008185

Coexpressed
gene list

[Coexpressed gene list for SSP4]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

248901_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

248901_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

248901_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	834684
Refseq ID (protein)	NP_001119383.1
	NP_001332006.1
	NP_199453.2

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