ATTED-II : GeneID search result

[←][→] ath AT5G46410 Gene

functional annotation

Function

SCP1-like small phosphatase 4

GO BP

GO:0006470 [list] [network] protein dephosphorylation

(133 genes)

IDA

GO CC

GO:0005634 [list] [network] nucleus

(10793 genes)

IDA ISM

GO MF

GO:0008420 [list] [network] RNA polymerase II CTD heptapeptide repeat phosphatase activity	(17 genes)	IDA
GO:0016791 [list] [network] phosphatase activity	(318 genes)	IEA

KEGG

Protein

NP_001119383.1 NP_001332006.1 NP_199453.2

BLAST

NP_001119383.1 NP_001332006.1 NP_199453.2

Orthologous

[Ortholog page] SSP4b (ath) LOC4326666 (osa) LOC4326854 (osa) LOC4339631 (osa) LOC7471836 (ppo) LOC11411659 (mtr) LOC100258847 (vvi) LOC100267967 (vvi) LOC100283041 (zma) LOC100381584 (zma) LOC100786602 (gma) LOC100799803 (gma) LOC101254863 (sly) LOC103651391 (zma) LOC103827734 (bra)

Subcellular
localization
wolf

cyto 4, nucl 3, chlo 1, mito 1, cysk 1, chlo_mito 1, golg_plas 1	(predict for NP_001119383.1)
cyto 4, nucl 3, chlo 1, mito 1, cysk 1, chlo_mito 1, golg_plas 1	(predict for NP_001332006.1)
cyto 4, nucl 3, chlo 1, mito 1, cysk 1, chlo_mito 1, golg_plas 1	(predict for NP_199453.2)

Subcellular
localization
TargetP

other 6	(predict for NP_001119383.1)
other 6	(predict for NP_001332006.1)
other 6	(predict for NP_199453.2)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with SSP4 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
11.1	SSP4b	SCP1-like small phosphatase 4b	[detail]	827539
6.3	AT4G32160	Phox (PX) domain-containing protein	[detail]	829348
6.1	AT4G32440	Plant Tudor-like RNA-binding protein	[detail]	829379
4.9	AT4G36648		[detail]	5008185

Coexpressed
gene list

[Coexpressed gene list for SSP4]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

248901_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

248901_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

248901_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	834684
Refseq ID (protein)	NP_001119383.1
	NP_001332006.1
	NP_199453.2

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