[←][→] ath   At5g46580 Gene
functional annotation
Function   pentatricopeptide (PPR) repeat-containing protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:1901259 [list] [network] chloroplast rRNA processing  (15 genes)  IMP  
GO:0042254 [list] [network] ribosome biogenesis  (189 genes)  IMP  
GO CC
GO:0009507 [list] [network] chloroplast  (5004 genes)  HDA ISM  
GO MF
GO:0033902 [list] [network] rRNA endonuclease activity  (1 genes)  ISS  
GO:0004530 [list] [network] deoxyribonuclease I activity  (3 genes)  ISS  
GO:0042134 [list] [network] rRNA primary transcript binding  (3 genes)  IDA  
GO:0003729 [list] [network] mRNA binding  (1535 genes)  IPI  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG
Protein NP_199470.1 
BLAST NP_199470.1 
Orthologous [Ortholog page] LOC4334836 (osa)  LOC11409834 (mtr)  LOC18096950 (ppo)  LOC100037555 (tae)  LOC100780994 (gma)  LOC100796315 (gma)  LOC101264145 (sly)  LOC103827727 (bra)  LOC123123932 (tae) 
Subcellular
localization
wolf
nucl 4,  cyto 2,  chlo 1,  plas 1,  cysk 1,  cysk_plas 1  (predict for NP_199470.1)
Subcellular
localization
TargetP
chlo 8,  other 3  (predict for NP_199470.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with AT5G46580 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
13.5 FLN1 fructokinase-like 1 [detail] 824576
13.3 FLN2 fructokinase-like protein [detail] 843251
12.3 BPG2 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 824885
11.6 BSM Mitochondrial transcription termination factor family protein [detail] 828116
10.7 AT3G12930 Lojap-related protein [detail] 820478
10.0 SVR7 pentatricopeptide (PPR) repeat-containing protein [detail] 827333
9.2 AT1G70200 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 843356
8.9 MEE40 Pentatricopeptide repeat (PPR) superfamily protein [detail] 824537
8.4 AT4G30825 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 829206
8.1 EGY1 Peptidase M50 family protein [detail] 833476
7.1 PTAC15 plastid transcriptionally active 15 [detail] 835506
7.0 AT3G04650 FAD/NAD(P)-binding oxidoreductase family protein [detail] 819623
5.9 AT2G21860 violaxanthin de-epoxidase-like protein [detail] 816722
Coexpressed
gene list		 [Coexpressed gene list for AT5G46580]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
248854_at
248854_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
248854_at
248854_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
248854_at
248854_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 834701      
Refseq ID (protein) NP_199470.1 


The preparation time of this page was 0.2 [sec].