[←][→] ath   AT5G46740 Gene
functional annotation
Function   ubiquitin-specific protease 21  
GO BP
GO:0016579 [list] [network] protein deubiquitination  (48 genes)  IBA  
GO:0006281 [list] [network] DNA repair  (295 genes)  IMP  
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (436 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0004843 [list] [network] thiol-dependent ubiquitin-specific protease activity  (42 genes)  IBA  
GO:0004197 [list] [network] cysteine-type endopeptidase activity  (66 genes)  IBA  
KEGG
Protein NP_001330462.1  NP_568667.1 
BLAST NP_001330462.1  NP_568667.1 
Orthologous [Ortholog page] UBP20 (ath)  LOC4330388 (osa)  LOC11424860 (mtr)  LOC11440485 (mtr)  LOC25494995 (mtr)  LOC25495672 (mtr)  LOC25495673 (mtr)  LOC25495674 (mtr)  LOC25501362 (mtr)  LOC25502882 (mtr)  LOC100806936 (gma)  LOC100808015 (gma)  LOC101244309 (sly)  LOC101250938 (sly)  LOC103627580 (zma)  LOC103653937 (zma)  LOC103827712 (bra)  LOC103834039 (bra)  LOC103853739 (bra)  LOC103860952 (bra)  LOC104882327 (vvi)  LOC109120858 (sly) 
Subcellular
localization
wolf
nucl 10  (predict for NP_001330462.1)
nucl 10  (predict for NP_568667.1)
Subcellular
localization
TargetP
other 7,  mito 3  (predict for NP_001330462.1)
chlo 9,  other 3  (predict for NP_568667.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 5
ath03420 Nucleotide excision repair 5
ath03430 Mismatch repair 5
ath03440 Homologous recombination 5
Genes directly connected with UBP21 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
10.0 RPA70B RPA70-kDa subunit B [detail] 830696
9.6 SYN3 Rad21/Rec8-like family protein [detail] 825124
9.4 MSH7 MUTS homolog 7 [detail] 822040
9.0 E2F3 E2F transcription factor 3 [detail] 818174
8.0 AT5G19920 Transducin/WD40 repeat-like superfamily protein [detail] 832114
6.9 AT3G20490 Rho GTPase-activating protein [detail] 821595
6.1 RPA70C Replication factor-A protein 1-like protein [detail] 834576
5.7 AT2G46040 ARID/BRIGHT AND ELM2 DNA-binding domain-containing protein [detail] 819212
5.7 CDKD1;3 cyclin-dependent kinase D1;3 [detail] 838384
5.2 AT3G20280 RING/FYVE/PHD zinc finger superfamily protein [detail] 821572
5.1 FBS4 F-box family protein [detail] 829748
Coexpressed
gene list		 [Coexpressed gene list for UBP21]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
248841_at
248841_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
248841_at
248841_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
248841_at
248841_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 834717      
Refseq ID (protein) NP_001330462.1 
NP_568667.1 


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