[←][→] ath   AT5G48640 Gene
functional annotation
Function   Cyclin family protein  
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (206 genes)  IBA  
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (334 genes)  IBA  
GO CC
GO:0016592 [list] [network] mediator complex  (43 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA ISM  
GO MF
GO:0016538 [list] [network] cyclin-dependent protein serine/threonine kinase regulator activity  (46 genes)  IBA  
KEGG
Protein NP_001330772.1  NP_001330773.1  NP_001330774.1  NP_001330775.1  NP_199675.2 
BLAST NP_001330772.1  NP_001330773.1  NP_001330774.1  NP_001330775.1  NP_199675.2 
Orthologous [Ortholog page] AT5G48630 (ath)  LOC7464420 (ppo)  LOC7471166 (ppo)  LOC9272663 (osa)  LOC11435941 (mtr)  LOC100193909 (zma)  LOC100245896 (vvi)  LOC100784345 (gma)  LOC100816019 (gma)  LOC101252599 (sly)  LOC103854550 (bra)  LOC103874972 (bra) 
Subcellular
localization
wolf
chlo_mito 4,  chlo 3,  mito 3,  cyto 2,  nucl 1,  golg 1  (predict for NP_001330772.1)
chlo_mito 4,  chlo 3,  mito 3,  cyto 2,  nucl 1,  golg 1  (predict for NP_001330773.1)
mito 7,  chlo 3  (predict for NP_001330774.1)
chlo_mito 4,  chlo 3,  mito 3,  cyto 2,  nucl 1,  golg 1  (predict for NP_001330775.1)
cyto 6,  mito 1,  chlo 1,  E.R. 1,  cysk 1,  cyto_mito 1,  mito_plas 1  (predict for NP_199675.2)
Subcellular
localization
TargetP
scret 4,  mito 4  (predict for NP_001330772.1)
scret 4,  mito 4  (predict for NP_001330773.1)
mito 8  (predict for NP_001330774.1)
scret 4,  mito 4  (predict for NP_001330775.1)
other 9  (predict for NP_199675.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with AT5G48640 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.1 AT5G48630 Cyclin family protein [detail] 834920
5.8 AT5G06265 hyaluronan mediated motility receptor-like protein [detail] 830514
5.6 AT3G20870 ZIP metal ion transporter family [detail] 821636
5.2 AT3G05700 Drought-responsive family protein [detail] 819739
4.7 AT1G13910 Leucine-rich repeat (LRR) family protein [detail] 837950
Coexpressed
gene list		 [Coexpressed gene list for AT5G48640]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
248659_at
248659_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
248659_at
248659_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
248659_at
248659_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 834921      
Refseq ID (protein) NP_001330772.1 
NP_001330773.1 
NP_001330774.1 
NP_001330775.1 
NP_199675.2 


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