[←][→] ath   At5g48900 Gene
functional annotation
Function   Pectin lyase-like superfamily protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0045490 [list] [network] pectin catabolic process  (78 genes)  IEA  
GO:0009639 [list] [network] response to red or far red light  (365 genes)  IEA  
GO:0009733 [list] [network] response to auxin  (384 genes)  IEA  
GO:0048589 [list] [network] developmental growth  (1060 genes)  IEA  
GO:0006629 [list] [network] lipid metabolic process  (1087 genes)  IEA  
GO:0048869 [list] [network] cellular developmental process  (1335 genes)  IEA  
GO CC
GO:0005576 [list] [network] extracellular region  (3154 genes)  ISM  
GO MF
GO:0030570 [list] [network] pectate lyase activity  (25 genes)  IEA  
GO:0016829 [list] [network] lyase activity  (284 genes)  ISS  
KEGG ath00040 [list] [network] Pentose and glucuronate interconversions (108 genes)
Protein NP_568705.1 
BLAST NP_568705.1 
Orthologous [Ortholog page] 9612 (sly)  AT3G07010 (ath)  AT3G24230 (ath)  AT3G24670 (ath)  AT3G27400 (ath)  AT3G53190 (ath)  PMR6 (ath)  AT4G13210 (ath)  AT4G13710 (ath)  AT4G24780 (ath)  AT5G04310 (ath)  AT5G63180 (ath)  AT1G04680 (ath)  AT1G67750 (ath)  LOC4335013 (osa)  LOC4348800 (osa)  LOC7453817 (ppo)  LOC7458080 (ppo)  LOC7460526 (ppo)  LOC7467675 (ppo)  LOC7468445 (ppo)  LOC7469382 (ppo)  LOC7477066 (ppo)  LOC7479851 (ppo)  LOC7481246 (ppo)  LOC7488611 (ppo)  LOC7494805 (ppo)  LOC11408829 (mtr)  LOC11409358 (mtr)  LOC11411484 (mtr)  LOC11426383 (mtr)  LOC18100132 (ppo)  LOC25483116 (mtr)  LOC25483947 (mtr)  LOC25485548 (mtr)  LOC25489517 (mtr)  LOC25499338 (mtr)  LOC100101868 (gma)  LOC100775595 (gma)  LOC100779940 (gma)  LOC100781845 (gma)  LOC100782388 (gma)  LOC100787082 (gma)  LOC100789303 (gma)  LOC100790659 (gma)  LOC100794814 (gma)  LOC100808438 (gma)  LOC100809277 (gma)  LOC100810380 (gma)  LOC100814679 (gma)  LOC100815062 (gma)  LOC100816256 (gma)  LOC101244298 (sly)  LOC101252082 (sly)  PL (sly)  LOC101254639 (sly)  LOC101257697 (sly)  LOC101260911 (sly)  LOC101263458 (sly)  LOC101264881 (sly)  LOC101264933 (sly)  LOC103828610 (bra)  LOC103828688 (bra)  LOC103829999 (bra)  LOC103831011 (bra)  LOC103831201 (bra)  LOC103833411 (bra)  LOC103834896 (bra)  LOC103836561 (bra)  LOC103837270 (bra)  LOC103837461 (bra)  LOC103841243 (bra)  LOC103841403 (bra)  LOC103843635 (bra)  LOC103844229 (bra)  LOC103847312 (bra)  LOC103850282 (bra)  LOC103852424 (bra)  LOC103854567 (bra)  LOC103855563 (bra)  LOC103861505 (bra)  LOC103862557 (bra)  LOC103863605 (bra)  LOC103863641 (bra)  LOC103870710 (bra)  LOC103873738 (bra)  LOC103875221 (bra)  LOC112323533 (ppo)  LOC123043123 (tae)  LOC123044722 (tae)  LOC123051018 (tae)  LOC123119621 (tae)  LOC123180958 (tae)  LOC123186967 (tae)  LOC123430122 (hvu)  LOC123431519 (hvu) 
Subcellular
localization
wolf
extr 4,  E.R. 1,  golg 1,  chlo 1,  cyto 1,  mito 1,  plas 1,  chlo_mito 1,  E.R._vacu 1,  mito_plas 1,  cyto_plas 1  (predict for NP_568705.1)
Subcellular
localization
TargetP
scret 9  (predict for NP_568705.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00040 Pentose and glucuronate interconversions 2
Genes directly connected with AT5G48900 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
11.5 EXPA11 expansin 11 [detail] 838608
10.7 DRT100 Leucine-rich repeat (LRR) family protein [detail] 820441
9.3 AT3G12710 DNA glycosylase superfamily protein [detail] 820453
8.6 AT4G32460 choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642) [detail] 829381
8.6 DGR2 transmembrane protein, putative (Protein of unknown function, DUF642) [detail] 832620
8.3 AT5G11420 transmembrane protein, putative (Protein of unknown function, DUF642) [detail] 831013
7.1 EXP3 Barwin-like endoglucanases superfamily protein [detail] 818341
6.8 AT5G50000 Protein kinase superfamily protein [detail] 835064
6.7 AT5G12940 Leucine-rich repeat (LRR) family protein [detail] 831134
5.3 BNQ2 BANQUO 2 [detail] 831368
4.3 AT4G32000 Protein kinase superfamily protein [detail] 829331
Coexpressed
gene list		 [Coexpressed gene list for AT5G48900]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
248681_at
248681_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
248681_at
248681_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
248681_at
248681_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 834948      
Refseq ID (protein) NP_568705.1 


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