[←][→] ath   AT5G49540 Gene
functional annotation
Function   Rab5-interacting family protein  
GO BP
GO:0000045 [list] [network] autophagosome assembly  (19 genes)  IBA  
GO CC
GO:0072546 [list] [network] ER membrane protein complex  (9 genes)  IBA  
GO MF
KEGG
Protein NP_001331350.1  NP_568710.1 
BLAST NP_001331350.1  NP_568710.1 
Orthologous [Ortholog page] LOC4324140 (osa)  LOC7485884 (ppo)  LOC11408789 (mtr)  LOC11424567 (mtr)  LOC100251751 (vvi)  LOC100306269 (gma)  LOC100306572 (gma)  LOC100382435 (zma)  LOC100383916 (zma)  LOC100526986 (gma)  LOC101268716 (sly)  LOC103837291 (bra)  LOC103874615 (bra) 
Subcellular
localization
wolf
vacu 5,  golg 3,  plas 1  (predict for NP_001331350.1)
vacu 5,  golg 3,  plas 1  (predict for NP_568710.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001331350.1)
other 9  (predict for NP_568710.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00510 N-Glycan biosynthesis 2
ath00513 Various types of N-glycan biosynthesis 2
ath04141 Protein processing in endoplasmic reticulum 2
ath04144 Endocytosis 2
Genes directly connected with AT5G49540 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.8 BLOS2 biogenesis of lysosome organelles complex 1 subunit-like protein [detail] 835016
7.2 AT5G54750 Transport protein particle (TRAPP) component [detail] 835565
6.7 AT1G77350 keratinocyte-associated-like protein [detail] 844071
6.7 AT5G59410 Rab5-interacting family protein [detail] 836060
5.2 AT4G01590 DNA-directed RNA polymerase III subunit [detail] 828101
4.3 AT5G15025 paired amphipathic helix Sin3-like protein [detail] 28721159
Coexpressed
gene list		 [Coexpressed gene list for AT5G49540]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
248588_at
248588_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
248588_at
248588_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
248588_at
248588_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 835015      
Refseq ID (protein) NP_001331350.1 
NP_568710.1 


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