[][] ath   AT5G51280 Gene
functional annotation
Function   DEAD-box protein abstrakt
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  IBA  
GO CC
GO:0005681 [list] [network] spliceosomal complex  (142 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0003724 [list] [network] RNA helicase activity  (75 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (554 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1790 genes)  IBA  
GO:0005524 [list] [network] ATP binding  (2003 genes)  IEA  
KEGG
Protein NP_199941.1 
BLAST NP_199941.1 
Orthologous [Ortholog page] AT4G33370 (ath)LOC4328308 (osa)LOC4341945 (osa)LOC11422418 (mtr)LOC25482250 (mtr)LOC100249809 (vvi)LOC100281463 (zma)LOC100814127 (gma)LOC100819984 (gma)LOC101259928 (sly)LOC101260827 (sly)LOC103830438 (bra)LOC103832481 (bra)LOC103853251 (bra)LOC103873229 (bra)
Subcellular
localization
wolf
chlo 4,  cyto 4,  plas 1  (predict for NP_199941.1)
Subcellular
localization
TargetP
other 8  (predict for NP_199941.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
ath03008 Ribosome biogenesis in eukaryotes 2
Genes directly connected with AT5G51280 on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
6.8 AT3G26560 ATP-dependent RNA helicase [detail] 822264
6.6 AT2G47330 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 819346
6.1 AT5G03970 F-box associated ubiquitination effector family protein [detail] 830276
5.7 AT1G50380 Prolyl oligopeptidase family protein [detail] 841460
5.1 SUVH3 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like protein [detail] 843641
4.4 AT3G14160 2-oxoglutarate-dependent dioxygenase family protein [detail] 820633
Coexpressed
gene list
[Coexpressed gene list for AT5G51280]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
248442_at
248442_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
248442_at
248442_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
248442_at
248442_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 835202    
Refseq ID (protein) NP_199941.1 


The preparation time of this page was 0.2 [sec].