[][] ath   AT5G51660 Gene
functional annotation
Function   cleavage and polyadenylation specificity factor 160
GO BP
GO:0006378 [list] [network] mRNA polyadenylation  (20 genes)  IBA  
GO CC
GO:0005829 [list] [network] cytosol  (3506 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA IDA ISM  
GO MF
GO:0003723 [list] [network] RNA binding  (1790 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath03015 [list] [network] mRNA surveillance pathway (115 genes)
Protein NP_001331729.1  NP_001331730.1  NP_001331731.1  NP_199979.2 
BLAST NP_001331729.1  NP_001331730.1  NP_001331731.1  NP_199979.2 
Orthologous [Ortholog page] LOC9266269 (osa)LOC25497136 (mtr)LOC100256706 (vvi)LOC100785543 (gma)LOC100801803 (gma)LOC101246111 (sly)LOC103648775 (zma)LOC103852133 (bra)
Subcellular
localization
wolf
cyto 4,  nucl 4,  chlo 1  (predict for NP_001331729.1)
cyto 6,  chlo 2,  nucl 1  (predict for NP_001331730.1)
cyto 4,  nucl 4,  chlo 1  (predict for NP_001331731.1)
nucl 4,  cyto 4,  cyto_nucl 4  (predict for NP_199979.2)
Subcellular
localization
TargetP
other 8  (predict for NP_001331729.1)
other 8  (predict for NP_001331730.1)
other 8  (predict for NP_001331731.1)
other 8  (predict for NP_199979.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 RNA transport 6
ath03015 mRNA surveillance pathway 2
Genes directly connected with CPSF160 on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
13.1 SAR1 SUPPRESSOR OF AUXIN RESISTANCE1 [detail] 840234
10.5 AT3G14120 nuclear pore complex protein [detail] 820629
8.9 NUP155 nucleoporin 155 [detail] 838050
8.3 AT1G23230 mediator of RNA polymerase II transcription subunit [detail] 838932
7.8 CPSF100 cleavage and polyadenylation specificity factor 100 [detail] 832453
6.6 AGO4 Argonaute family protein [detail] 817246
6.1 AT3G20010 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [detail] 821539
5.7 PEX6 peroxin 6 [detail] 839315
4.8 RAPTOR2 regulatory-associated protein of TOR 2 (RAPTOR2) [detail] 831681
Coexpressed
gene list
[Coexpressed gene list for CPSF160]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
248418_at
248418_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
248418_at
248418_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
248418_at
248418_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 835240    
Refseq ID (protein) NP_001331729.1 
NP_001331730.1 
NP_001331731.1 
NP_199979.2 


The preparation time of this page was 0.2 [sec].