[←][→] ath   At5g52380 Gene
functional annotation
Function   VASCULAR-RELATED NAC-DOMAIN 6    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0008270 [list] [network] zinc ion binding  (429 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (3100 genes)  IEA  
KEGG
Protein NP_200051.1 
BLAST NP_200051.1 
Orthologous [Ortholog page] LOC4336623 (osa)  LOC7474047 (ppo)  LOC7482099 (ppo)  LOC101268652 (sly)  LOC103832511 (bra)  LOC103857125 (bra)  LOC112416234 (mtr)  LOC121174300 (gma)  LOC123046375 (tae)  LOC123054219 (tae) 
Subcellular
localization
wolf
nucl 8,  mito 1,  plas 1,  extr 1,  mito_plas 1  (predict for NP_200051.1)
Subcellular
localization
TargetP
other 3,  mito 3  (predict for NP_200051.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
ath03020 RNA polymerase 2
Genes directly connected with AT5G52380 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
12.2 PPAN PETER PAN-like protein [detail] 836299
11.2 AT1G80750 Ribosomal protein L30/L7 family protein [detail] 844414
10.4 EDA14 embryo sac development arrest 14 [detail] 825207
9.6 AT1G07840 Sas10/Utp3/C1D family [detail] 837299
9.2 AT4G37090 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase [detail] 829863
8.9 AT3G25940 TFIIB zinc-binding protein [detail] 822191
7.7 AT3G49890 uncharacterized protein [detail] 824151
6.9 AT5G09380 RNA polymerase III RPC4 [detail] 830797
Coexpressed
gene list		 [Coexpressed gene list for AT5G52380]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
248357_at
248357_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
248357_at
248357_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
248357_at
248357_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 835314      
Refseq ID (protein) NP_200051.1 


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