[←][→] ath   At5g53060 Gene
functional annotation
Function   RNA-binding KH domain-containing protein      
GO BP
GO:0031053 [list] [network] primary miRNA processing  (9 genes)  IMP  
GO:1900150 [list] [network] regulation of defense response to fungus  (40 genes)  IMP  
GO:0010286 [list] [network] heat acclimation  (71 genes)  IMP  
GO:0009867 [list] [network] jasmonic acid mediated signaling pathway  (147 genes)  IMP  
GO:0006970 [list] [network] response to osmotic stress  (883 genes)  IMP  
GO:0010468 [list] [network] regulation of gene expression  (2177 genes)  IMP  
GO CC
GO:0010445 [list] [network] nuclear dicing body  (6 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0070878 [list] [network] primary miRNA binding  (3 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG
Protein NP_001190526.1  NP_001330551.1  NP_200118.3 
BLAST NP_001190526.1  NP_001330551.1  NP_200118.3 
Orthologous [Ortholog page] LOC4340961 (osa)  LOC7464536 (ppo)  LOC7496406 (ppo)  LOC11423660 (mtr)  LOC100782999 (gma)  LOC100804167 (gma)  LOC101261995 (sly)  LOC103844788 (bra)  LOC103852061 (bra)  LOC123147739 (tae)  LOC123156346 (tae)  LOC123166542 (tae)  LOC123407590 (hvu) 
Subcellular
localization
wolf
nucl 3,  cyto 2,  nucl_plas 2,  plas 1,  E.R. 1,  cysk_nucl 1,  cyto_pero 1,  E.R._plas 1  (predict for NP_001190526.1)
nucl 4,  cyto 4,  cyto_nucl 4  (predict for NP_001330551.1)
cyto 4,  nucl 3,  chlo 1,  cysk_nucl 1  (predict for NP_200118.3)
Subcellular
localization
TargetP
other 8,  mito 3  (predict for NP_001190526.1)
other 8,  mito 3  (predict for NP_001330551.1)
other 8,  mito 3  (predict for NP_200118.3)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with RCF3 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
6.2 AT1G01260 basic helix-loop-helix (bHLH) DNA-binding superfamily protein [detail] 839545
5.4 GTE3 global transcription factor group E3 [detail] 843646
5.3 CHB3 DNA-binding family protein [detail] 829594
5.3 AT1G76380 DNA-binding bromodomain-containing protein [detail] 843970
5.2 DBR1 debranching enzyme 1 [detail] 829305
Coexpressed
gene list		 [Coexpressed gene list for RCF3]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
248294_at
248294_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
248294_at
248294_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
248294_at
248294_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 835386      
Refseq ID (protein) NP_001190526.1 
NP_001330551.1 
NP_200118.3 


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