[←][→] ath   AT5G53060 Gene
functional annotation
Function   RNA-binding KH domain-containing protein  
GO BP
GO:0031053 [list] [network] primary miRNA processing  (12 genes)  IMP  
GO:1900150 [list] [network] regulation of defense response to fungus  (25 genes)  IMP  
GO:0010286 [list] [network] heat acclimation  (53 genes)  IMP  
GO:0009867 [list] [network] jasmonic acid mediated signaling pathway  (71 genes)  IMP  
GO:0008380 [list] [network] RNA splicing  (272 genes)  IEA  
GO:0006397 [list] [network] mRNA processing  (376 genes)  IEA  
GO:0006970 [list] [network] response to osmotic stress  (563 genes)  IMP  
GO:0010468 [list] [network] regulation of gene expression  (2484 genes)  IMP  
GO CC
GO:0010445 [list] [network] nuclear dicing body  (6 genes)  IDA  
GO:0016607 [list] [network] nuclear speck  (86 genes)  IEA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0070878 [list] [network] primary miRNA binding  (3 genes)  IDA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_001190526.1  NP_001330551.1  NP_200118.3 
BLAST NP_001190526.1  NP_001330551.1  NP_200118.3 
Orthologous [Ortholog page] LOC4340961 (osa)  LOC7464536 (ppo)  LOC11423660 (mtr)  LOC100258944 (vvi)  LOC100383161 (zma)  LOC100782999 (gma)  LOC100804167 (gma)  LOC101261995 (sly)  LOC103638431 (zma)  LOC103844788 (bra)  LOC103852061 (bra) 
Subcellular
localization
wolf
nucl 3,  cyto 2,  nucl_plas 2,  plas 1,  E.R. 1,  cysk_nucl 1,  cyto_pero 1,  E.R._plas 1  (predict for NP_001190526.1)
nucl 4,  cyto 4,  cyto_nucl 4  (predict for NP_001330551.1)
cyto 4,  nucl 3,  chlo 1,  cysk_nucl 1  (predict for NP_200118.3)
Subcellular
localization
TargetP
other 8,  mito 3  (predict for NP_001190526.1)
other 8,  mito 3  (predict for NP_001330551.1)
other 8,  mito 3  (predict for NP_200118.3)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
Genes directly connected with RCF3 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.5 PI-4KBETA1 phosphatidylinositol 4-OH kinase beta1 [detail] 836528
7.4 AT3G09100 mRNA capping enzyme family protein [detail] 820064
6.6 AT4G30780 ATP-dependent DNA helicase [detail] 829201
6.2 AT5G53050 alpha/beta-Hydrolases superfamily protein [detail] 835385
Coexpressed
gene list		 [Coexpressed gene list for RCF3]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
248294_at
248294_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
248294_at
248294_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
248294_at
248294_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 835386      
Refseq ID (protein) NP_001190526.1 
NP_001330551.1 
NP_200118.3 


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