[←][→] ath   At5g53120 Gene
functional annotation
Function   spermidine synthase 3    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0006597 [list] [network] spermine biosynthetic process  (4 genes)  IMP  
GO:0006596 [list] [network] polyamine biosynthetic process  (12 genes)  IDA  
GO:0042742 [list] [network] defense response to bacterium  (980 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (13880 genes)  TAS  
GO MF
GO:0016768 [list] [network] spermine synthase activity  (2 genes)  IDA IMP  
GO:0004766 [list] [network] spermidine synthase activity  (3 genes)  IDA ISS  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath00270 [list] [network] Cysteine and methionine metabolism (124 genes)
ath00330 [list] [network] Arginine and proline metabolism (54 genes)
ath00480 [list] [network] Glutathione metabolism (103 genes)
Protein NP_001078748.1  NP_001078749.1  NP_001190527.1  NP_001332707.1  NP_568785.1  NP_851178.1  NP_851179.1 
BLAST NP_001078748.1  NP_001078749.1  NP_001190527.1  NP_001332707.1  NP_568785.1  NP_851178.1  NP_851179.1 
Orthologous [Ortholog page] SPM1 (sly)  LOC4328910 (osa)  LOC4341195 (osa)  LOC7465536 (ppo)  LOC7489825 (ppo)  LOC11417417 (mtr)  LOC25482358 (mtr)  LOC100682470 (tae)  LOC100815244 (gma)  LOC100816988 (gma)  LOC103844792 (bra)  LOC103852054 (bra)  LOC123103399 (tae)  LOC123111597 (tae)  LOC123120961 (tae)  LOC123147926 (tae)  LOC123164645 (tae)  LOC123394905 (hvu)  LOC123410028 (hvu) 
Subcellular
localization
wolf
cyto 6,  cysk 2,  chlo 1,  E.R._vacu 1  (predict for NP_001078748.1)
cyto 6,  cysk 2,  chlo 1,  E.R._vacu 1  (predict for NP_001078749.1)
cyto 7,  nucl 1,  cysk 1,  nucl_plas 1,  E.R._vacu 1  (predict for NP_001190527.1)
cyto 9,  chlo 1  (predict for NP_001332707.1)
cyto 6,  cysk 2,  chlo 1,  E.R._vacu 1  (predict for NP_568785.1)
cyto 6,  cysk 2,  chlo 1,  E.R._vacu 1  (predict for NP_851178.1)
cyto 6,  cysk 2,  chlo 1,  E.R._vacu 1  (predict for NP_851179.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001078748.1)
other 8  (predict for NP_001078749.1)
other 8  (predict for NP_001190527.1)
other 8  (predict for NP_001332707.1)
other 8  (predict for NP_568785.1)
other 8  (predict for NP_851178.1)
other 8  (predict for NP_851179.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 4
ath00330 Arginine and proline metabolism 3
ath00410 beta-Alanine metabolism 2
ath00770 Pantothenate and CoA biosynthesis 2
Genes directly connected with SPDS3 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
5.2 ATS9 non-ATPase subunit 9 [detail] 839789
5.2 AT1G67360 Rubber elongation factor protein (REF) [detail] 843057
4.8 PAO2 polyamine oxidase 2 [detail] 818904
Coexpressed
gene list		 [Coexpressed gene list for SPDS3]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
248248_at
248248_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
248248_at
248248_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
248248_at
248248_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 835392      
Refseq ID (protein) NP_001078748.1 
NP_001078749.1 
NP_001190527.1 
NP_001332707.1 
NP_568785.1 
NP_851178.1 
NP_851179.1 


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