[←][→] ath   At5g53180 Gene
functional annotation
Function   polypyrimidine tract-binding protein 2      
GO BP
GO:0000381 [list] [network] regulation of alternative mRNA splicing, via spliceosome  (8 genes)  IMP  
GO:0043484 [list] [network] regulation of RNA splicing  (21 genes)  IDA  
GO:0006417 [list] [network] regulation of translation  (50 genes)  IEP  
GO:0009846 [list] [network] pollen germination  (80 genes)  IGI  
GO:0009845 [list] [network] seed germination  (99 genes)  IMP  
GO CC
GO:0000932 [list] [network] P-body  (32 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO:0005737 [list] [network] cytoplasm  (13880 genes)  IDA  
GO MF
GO:0003729 [list] [network] mRNA binding  (1535 genes)  HDA IDA  
GO:0003723 [list] [network] RNA binding  (1729 genes)  IDA  
KEGG
Protein NP_001078750.1  NP_001332166.1  NP_001332167.1  NP_001332168.1  NP_001332169.1  NP_200130.1 
BLAST NP_001078750.1  NP_001332166.1  NP_001332167.1  NP_001332168.1  NP_001332169.1  NP_200130.1 
Orthologous [Ortholog page] PTB1 (ath)  LOC4326619 (osa)  LOC4332960 (osa)  LOC4345664 (osa)  LOC7453843 (ppo)  LOC7495985 (ppo)  LOC11420325 (mtr)  LOC11425189 (mtr)  LOC18097705 (ppo)  LOC25482365 (mtr)  LOC100778533 (gma)  LOC100788927 (gma)  LOC100792308 (gma)  LOC100810102 (gma)  LOC100813651 (gma)  LOC100819659 (gma)  LOC101251347 (sly)  LOC101251752 (sly)  LOC103857097 (bra)  LOC103870954 (bra)  LOC112323233 (ppo)  LOC123061506 (tae)  LOC123070150 (tae)  LOC123085922 (tae)  LOC123091964 (tae)  LOC123097400 (tae)  LOC123154346 (tae)  LOC123160611 (tae)  LOC123168850 (tae)  LOC123413547 (hvu)  LOC123443897 (hvu)  LOC123448524 (hvu) 
Subcellular
localization
wolf
chlo 6,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for NP_001078750.1)
chlo 5,  nucl 1,  cyto 1,  mito 1,  extr 1,  E.R. 1,  pero 1,  cysk_nucl 1,  nucl_plas 1,  cyto_pero 1,  cyto_E.R. 1  (predict for NP_001332166.1)
nucl 4,  chlo 4,  chlo_mito 3,  mito 1  (predict for NP_001332167.1)
chlo 6,  nucl 2,  mito 1,  plas 1,  mito_plas 1  (predict for NP_001332168.1)
extr 4,  chlo 1,  nucl 1,  pero 1,  cyto 1,  mito 1,  E.R. 1,  cysk_nucl 1,  nucl_plas 1,  cyto_E.R. 1  (predict for NP_001332169.1)
chlo 7,  mito 2  (predict for NP_200130.1)
Subcellular
localization
TargetP
mito 6,  scret 4  (predict for NP_001078750.1)
mito 7,  other 4  (predict for NP_001332166.1)
mito 7  (predict for NP_001332167.1)
mito 7  (predict for NP_001332168.1)
other 6,  scret 5  (predict for NP_001332169.1)
other 3,  mito 3  (predict for NP_200130.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 2
ath03015 mRNA surveillance pathway 2
ath03040 Spliceosome 2
ath03018 RNA degradation 2
Genes directly connected with PTB2 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
9.5 FLK RNA-binding KH domain-containing protein [detail] 819619
6.6 AT1G30470 SIT4 phosphatase-associated family protein [detail] 839926
6.6 AT4G10070 KH domain-containing protein [detail] 826598
Coexpressed
gene list		 [Coexpressed gene list for PTB2]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
248304_at
248304_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
248304_at
248304_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
248304_at
248304_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 835399      
Refseq ID (protein) NP_001078750.1 
NP_001332166.1 
NP_001332167.1 
NP_001332168.1 
NP_001332169.1 
NP_200130.1 


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