[←][→] ath   AT5G53360 Gene
functional annotation
Function   TRAF-like superfamily protein  
GO BP
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (436 genes)  IEA  
GO:0016567 [list] [network] protein ubiquitination  (624 genes)  IDA IEA  
GO:0007275 [list] [network] multicellular organism development  (2714 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  IEA ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IEA ISM  
GO MF
GO:0008270 [list] [network] zinc ion binding  (554 genes)  IEA  
GO:0016740 [list] [network] transferase activity  (3833 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath04120 [list] [network] Ubiquitin mediated proteolysis (143 genes)
Protein NP_001330825.1  NP_001330826.1  NP_200148.2 
BLAST NP_001330825.1  NP_001330826.1  NP_200148.2 
Orthologous
Subcellular
localization
wolf
cyto 4,  chlo 3,  nucl 1,  plas 1,  vacu 1,  cysk 1,  cysk_nucl 1,  nucl_plas 1,  cysk_plas 1  (predict for NP_001330825.1)
nucl 4,  cyto 2,  extr 2,  nucl_plas 2  (predict for NP_001330826.1)
cyto 4,  chlo 3,  nucl 1,  plas 1,  vacu 1,  cysk 1,  cysk_nucl 1,  nucl_plas 1,  cysk_plas 1  (predict for NP_200148.2)
Subcellular
localization
TargetP
scret 5,  other 4  (predict for NP_001330825.1)
other 9  (predict for NP_001330826.1)
scret 5,  other 4  (predict for NP_200148.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04130 SNARE interactions in vesicular transport 2
Genes directly connected with AT5G53360 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
5.3 MEMB11 membrin 11 [detail] 818264
4.7 AT2G42780 transcription elongation factor B polypeptide [detail] 818878
4.7 AT3G09320 DHHC-type zinc finger family protein [detail] 820088
Coexpressed
gene list		 [Coexpressed gene list for AT5G53360]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
248256_at
248256_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
248256_at
248256_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
248256_at
248256_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 835417      
Refseq ID (protein) NP_001330825.1 
NP_001330826.1 
NP_200148.2 


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