[←][→] ath   At5g53360 Gene
functional annotation
Function   TRAF-like superfamily protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (230 genes)  IEA  
GO:0016567 [list] [network] protein ubiquitination  (434 genes)  IDA IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (13880 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath04120 [list] [network] Ubiquitin mediated proteolysis (155 genes)
Protein NP_001330825.1  NP_001330826.1  NP_200148.2 
BLAST NP_001330825.1  NP_001330826.1  NP_200148.2 
Orthologous [Ortholog page] AT2G41980 (ath)  SINAT2 (ath)  AT3G61790 (ath)  AT4G27880 (ath)  LOC4327774 (osa)  LOC4329066 (osa)  LOC4338181 (osa)  LOC7455750 (ppo)  LOC7457400 (ppo)  LOC7463600 (ppo)  LOC7475187 (ppo)  LOC7479519 (ppo)  LOC7484028 (ppo)  LOC7486772 (ppo)  LOC7496400 (ppo)  LOC11418493 (mtr)  LOC11423170 (mtr)  LOC11446457 (mtr)  LOC25483549 (mtr)  LOC25499735 (mtr)  LOC25500674 (mtr)  LOC100500061 (gma)  LOC100782764 (gma)  LOC100792687 (gma)  LOC100810573 (gma)  LOC100813966 (gma)  LOC101246723 (sly)  LOC101253831 (sly)  SlSINA5 (sly)  SINA4 (sly)  SlSINA1 (sly)  LOC101264159 (sly)  LOC103830135 (bra)  LOC103830327 (bra)  LOC103834788 (bra)  LOC103841701 (bra)  LOC103858006 (bra)  LOC103862812 (bra)  LOC103863005 (bra)  LOC103865920 (bra)  LOC103867677 (bra)  LOC123060825 (tae)  LOC123069400 (tae)  LOC123077898 (tae)  LOC123147734 (tae)  LOC123157150 (tae)  LOC123165457 (tae)  LOC123180859 (tae)  LOC123407757 (hvu)  LOC123428647 (hvu)  LOC123443282 (hvu) 
Subcellular
localization
wolf
cyto 4,  chlo 3,  nucl 1,  plas 1,  vacu 1,  cysk 1,  cysk_nucl 1,  nucl_plas 1,  cysk_plas 1  (predict for NP_001330825.1)
nucl 4,  cyto 2,  extr 2,  nucl_plas 2  (predict for NP_001330826.1)
cyto 4,  chlo 3,  nucl 1,  plas 1,  vacu 1,  cysk 1,  cysk_nucl 1,  nucl_plas 1,  cysk_plas 1  (predict for NP_200148.2)
Subcellular
localization
TargetP
scret 5,  other 4  (predict for NP_001330825.1)
other 9  (predict for NP_001330826.1)
scret 5,  other 4  (predict for NP_200148.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04130 SNARE interactions in vesicular transport 3
ath04120 Ubiquitin mediated proteolysis 2
ath04141 Protein processing in endoplasmic reticulum 2
Genes directly connected with AT5G53360 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
6.2 AT2G42780 transcription elongation factor B polypeptide [detail] 818878
6.2 AT3G22290 Endoplasmic reticulum vesicle transporter protein [detail] 821798
5.9 AT1G15350 DUF4050 family protein [detail] 838104
5.3 AT4G26180 Mitochondrial substrate carrier family protein [detail] 828724
Coexpressed
gene list		 [Coexpressed gene list for AT5G53360]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
248256_at
248256_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
248256_at
248256_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
248256_at
248256_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 835417      
Refseq ID (protein) NP_001330825.1 
NP_001330826.1 
NP_200148.2 


The preparation time of this page was 0.1 [sec].