[←][→] ath   At5g54270 Gene
functional annotation
Function   light-harvesting chlorophyll B-binding protein 3    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0009769 [list] [network] photosynthesis, light harvesting in photosystem II  (6 genes)  IMP  
GO:0009635 [list] [network] response to herbicide  (9 genes)  IEP  
GO:0009644 [list] [network] response to high light intensity  (65 genes)  IEP  
GO:0010119 [list] [network] regulation of stomatal movement  (105 genes)  IMP  
GO:0015979 [list] [network] photosynthesis  (167 genes)  IMP  
GO:0009737 [list] [network] response to abscisic acid  (1086 genes)  IMP  
GO CC
GO:0009517 [list] [network] PSII associated light-harvesting complex II  (7 genes)  IDA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (315 genes)  HDA  
GO:0042651 [list] [network] thylakoid membrane  (350 genes)  IDA  
GO:0009534 [list] [network] chloroplast thylakoid  (415 genes)  HDA  
GO:0009579 [list] [network] thylakoid  (509 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5004 genes)  HDA ISM  
GO:0009536 [list] [network] plastid  (5425 genes)  HDA  
GO MF
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath00196 [list] [network] Photosynthesis - antenna proteins (22 genes)
Protein NP_200238.1 
BLAST NP_200238.1 
Orthologous [Ortholog page] LOC4343604 (osa)  LOC11405314 (mtr)  LOC18095653 (ppo)  LOC100779387 (gma)  LOC100790960 (gma)  CAB13 (sly)  LOC101268123 (sly)  LOC103844887 (bra)  LOC123148365 (tae)  LOC123183260 (tae)  LOC123188262 (tae)  LOC123425700 (hvu) 
Subcellular
localization
wolf
chlo 6,  mito 1,  nucl 1,  extr 1,  E.R. 1,  cyto_mito 1,  mito_plas 1  (predict for NP_200238.1)
Subcellular
localization
TargetP
chlo 7  (predict for NP_200238.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00196 Photosynthesis - antenna proteins 11
ath00195 Photosynthesis 7
ath00860 Porphyrin metabolism 2
Genes directly connected with LHCB3 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
23.2 LHCA1 chlorophyll a-b binding protein 6 [detail] 824654
22.9 LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 [detail] 823901
22.0 LHCB5 light harvesting complex of photosystem II 5 [detail] 826626
21.8 LHCA3 PSI type III chlorophyll a/b-binding protein [detail] 842446
21.1 LHCB6 light harvesting complex photosystem II subunit 6 [detail] 838151
17.8 LHCB4.2 light harvesting complex photosystem II [detail] 820043
16.3 LHCB2.2 photosystem II light harvesting complex protein 2.2 [detail] 815055
15.9 LHCB2.1 photosystem II light harvesting complex protein 2.1 [detail] 815058
13.6 CRD1 dicarboxylate diiron protein, putative (Crd1) [detail] 824861
12.8 AT5G19940 Plastid-lipid associated protein PAP / fibrillin family protein [detail] 832116
Coexpressed
gene list		 [Coexpressed gene list for LHCB3]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
248151_at
248151_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
248151_at
248151_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
248151_at
248151_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 835515      
Refseq ID (protein) NP_200238.1 


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