ATTED-II : GeneID search result

[←][→] ath AT5G54940 Gene

functional annotation

Function

Translation initiation factor SUI1 family protein

GO BP

GO:0006413 [list] [network] translational initiation	(95 genes)	IEA
GO:0071456 [list] [network] cellular response to hypoxia	(238 genes)	HEP

GO CC

GO:0009536 [list] [network] plastid

(5519 genes)

HDA

GO MF

GO:0003743 [list] [network] translation initiation factor activity	(95 genes)	IEA
GO:0003723 [list] [network] RNA binding	(1790 genes)	IBA

KEGG

ath03013 [list] [network] RNA transport (171 genes)

Protein

NP_001332503.1 NP_568818.1 NP_851192.1

BLAST

NP_001332503.1 NP_568818.1 NP_851192.1

Orthologous

[Ortholog page] LOC541664 (zma) AT4G27130 (ath) AT5G54760 (ath) AT1G54290 (ath) LOC4339216 (osa) LOC4343445 (osa) LOC7454418 (ppo) LOC7468126 (ppo) LOC7486037 (ppo) LOC11428259 (mtr) LOC11436635 (mtr) LOC25492108 (mtr) LOC100243115 (vvi) LOC100243506 (vvi) LOC100245122 (vvi) LOC100284617 (zma) LOC100306129 (gma) LOC100499676 (gma) LOC100499833 (gma) LOC100784390 (gma) LOC100788156 (gma) LOC100791423 (gma) LOC100791863 (gma) LOC101247541 (sly) LOC101247963 (sly) LOC101257046 (sly) LOC101257488 (sly) LOC103832618 (bra) LOC103832754 (bra) LOC103834817 (bra) LOC103857017 (bra) LOC103861677 (bra) LOC103866870 (bra)

Subcellular
localization
wolf

cyto 4, nucl 3, extr 2, mito 1, cysk 1	(predict for NP_001332503.1)
cyto 4, nucl 3, extr 2, mito 1, cysk 1	(predict for NP_568818.1)
cyto 4, nucl 3, extr 2, mito 1, cysk 1	(predict for NP_851192.1)

Subcellular
localization
TargetP

other 8	(predict for NP_001332503.1)
other 8	(predict for NP_568818.1)
other 8	(predict for NP_851192.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	RNA transport	2

Genes directly connected with AT5G54940 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
5.8	ERD15	dehydration-induced protein (ERD15)	[detail]	818741
5.1	AT5G54760	Translation initiation factor SUI1 family protein	[detail]	835566
4.9	TRX3	thioredoxin 3	[detail]	834313

Coexpressed
gene list

[Coexpressed gene list for AT5G54940]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

248146_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

248146_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

248146_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	835585
Refseq ID (protein)	NP_001332503.1
	NP_568818.1
	NP_851192.1

The preparation time of this page was 0.2 [sec].