[][] ath   AT5G57280 Gene
functional annotation
Function   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
GO BP
GO:1990110 [list] [network] callus formation  (2 genes)  IMP  
GO:0070476 [list] [network] rRNA (guanine-N7)-methylation  (3 genes)  IBA  
GO:0010078 [list] [network] maintenance of root meristem identity  (12 genes)  IMP  
GO:0048527 [list] [network] lateral root development  (117 genes)  IMP  
GO:0006364 [list] [network] rRNA processing  (276 genes)  IMP  
GO:0048364 [list] [network] root development  (482 genes)  IMP  
GO CC
GO:0048471 [list] [network] perinuclear region of cytoplasm  (23 genes)  IEA  
GO:0005654 [list] [network] nucleoplasm  (444 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (477 genes)  IBA IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA ISM  
GO MF
GO:0016435 [list] [network] rRNA (guanine) methyltransferase activity  (3 genes)  IBA  
KEGG
Protein NP_200538.1 
BLAST NP_200538.1 
Orthologous [Ortholog page] LOC4331056 (osa)LOC7467679 (ppo)LOC11420496 (mtr)LOC11421941 (mtr)LOC100194268 (zma)LOC100264221 (vvi)LOC100792606 (gma)LOC100801198 (gma)LOC101247928 (sly)LOC103856762 (bra)
Subcellular
localization
wolf
nucl 8,  cysk 1  (predict for NP_200538.1)
Subcellular
localization
TargetP
other 8  (predict for NP_200538.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with RID2 on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
14.0 PPAN PETER PAN-like protein [detail] 836299
13.8 AT3G13230 RNA-binding KH domain-containing protein [detail] 820521
13.2 AT1G31660 bystin-like protein [detail] 840053
13.1 MEE49 Ribosomal RNA processing Brix domain protein [detail] 828136
12.1 AT3G22660 rRNA processing protein-like protein [detail] 821837
10.8 EDA14 embryo sac development arrest 14 [detail] 825207
10.7 AT1G15420 WD repeat protein [detail] 838113
10.7 AT1G75670 DNA-directed RNA polymerase [detail] 843901
10.7 AT5G60990 DEA(D/H)-box RNA helicase family protein [detail] 836220
10.2 AT1G65030 Transducin/WD40 repeat-like superfamily protein [detail] 842811
10.2 RRP4 ribosomal RNA processing 4 [detail] 839521
10.2 AT3G15080 Polynucleotidyl transferase, ribonuclease H-like superfamily protein [detail] 820738
9.7 RPSAb 40s ribosomal protein SA B [detail] 819637
9.6 AT5G62440 EMB514 (DUF3223) [detail] 836365
8.6 RBP47C' RNA-binding protein 47C' [detail] 841159
5.7 AT1G06790 RNA polymerase Rpb7 N-terminal domain-containing protein [detail] 837190
Coexpressed
gene list
[Coexpressed gene list for RID2]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
247926_at
247926_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
247926_at
247926_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
247926_at
247926_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 835833    
Refseq ID (protein) NP_200538.1 


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