[←][→] ath   AT5G59180 Gene
functional annotation
Function   DNA-directed RNA polymerase II  
GO BP
GO:0060213 [list] [network] positive regulation of nuclear-transcribed mRNA poly(A) tail shortening  (1 genes)  IBA  
GO:0045948 [list] [network] positive regulation of translational initiation  (3 genes)  IBA  
GO:0000291 [list] [network] nuclear-transcribed mRNA catabolic process, exonucleolytic  (24 genes)  IBA  
GO:0006367 [list] [network] transcription initiation from RNA polymerase II promoter  (29 genes)  IBA  
GO CC
GO:0005665 [list] [network] RNA polymerase II, core complex  (22 genes)  IBA IDA IPI  
GO:0000932 [list] [network] P-body  (56 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0031369 [list] [network] translation initiation factor binding  (16 genes)  IBA  
GO:0003899 [list] [network] DNA-directed 5'-3' RNA polymerase activity  (59 genes)  IBA  
GO:0003727 [list] [network] single-stranded RNA binding  (64 genes)  IBA  
GO:0003697 [list] [network] single-stranded DNA binding  (75 genes)  IBA  
KEGG ath03020 [list] [network] RNA polymerase (45 genes)
Protein NP_200726.1 
BLAST NP_200726.1 
Orthologous [Ortholog page] RNA polymerase II (gma)  LOC4338726 (osa)  LOC7491348 (ppo)  LOC11407767 (mtr)  LOC100248358 (vvi)  LOC100283223 (zma)  LOC100793057 (gma)  LOC101259753 (sly)  LOC103845342 (bra)  LOC103851602 (bra) 
Subcellular
localization
wolf
cyto 7,  nucl 1,  chlo 1,  mito 1,  chlo_mito 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_200726.1)
Subcellular
localization
TargetP
mito 6,  other 4  (predict for NP_200726.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 RNA transport 3
ath03015 mRNA surveillance pathway 2
Genes directly connected with NRPB7 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
9.0 EIF4E eukaryotic translation initiation factor 4E [detail] 827529
7.8 AT5G11900 Translation initiation factor SUI1 family protein [detail] 831063
7.7 AT1G66070 Translation initiation factor eIF3 subunit [detail] 842921
6.7 AT1G68185 Ubiquitin-like superfamily protein [detail] 843147
6.0 AT5G46560 Man1-Src1p-carboxy-terminal domain protein [detail] 834699
5.7 AT2G45695 Ubiquitin related modifier 1 [detail] 5007965
5.3 SGA2 ASF1 like histone chaperone [detail] 842992
Coexpressed
gene list		 [Coexpressed gene list for NRPB7]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
247763_at
247763_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
247763_at
247763_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
247763_at
247763_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 836036      
Refseq ID (protein) NP_200726.1 


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