[←][→] ath   At5g60540 Gene
functional annotation
Function   pyridoxine biosynthesis 2      
GO BP
GO:0042819 [list] [network] vitamin B6 biosynthetic process  (5 genes)  IGI IMP  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (697 genes)  NAS  
GO CC
GO:0005829 [list] [network] cytosol  (2559 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (13880 genes)  ISM  
GO MF
GO:0004359 [list] [network] glutaminase activity  (1 genes)  IDA ISS  
GO:0036381 [list] [network] pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity  (1 genes)  IEA  
GO:0046982 [list] [network] protein heterodimerization activity  (97 genes)  IPI  
KEGG ath00750 [list] [network] Vitamin B6 metabolism (15 genes)
ath01240 [list] [network] Biosynthesis of cofactors (236 genes)
Protein NP_568922.1 
BLAST NP_568922.1 
Orthologous [Ortholog page] LOC4328188 (osa)  LOC7491139 (ppo)  LOC11409211 (mtr)  LOC100776337 (gma)  LOC100786227 (gma)  LOC101254971 (sly)  LOC103845470 (bra)  LOC123084744 (tae)  LOC123093346 (tae)  LOC123100318 (tae)  LOC123131982 (tae)  LOC123136058 (tae)  LOC123143509 (tae)  LOC123403124 (hvu)  LOC123449587 (hvu) 
Subcellular
localization
wolf
cyto 7,  chlo 1,  nucl 1,  cysk 1,  chlo_mito 1,  cysk_nucl 1  (predict for NP_568922.1)
Subcellular
localization
TargetP
mito 3  (predict for NP_568922.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 4
ath01240 Biosynthesis of cofactors 3
Genes directly connected with PDX2 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
6.4 PWD chloroplastidic phosphoglucan, water dikinase (ATGWD3) [detail] 832706
6.1 PRR3 pseudo-response regulator 3 [detail] 836132
5.7 AGL26 tRNA (cytidine(34)-2'-O)-methyltransferase [detail] 832746
Coexpressed
gene list		 [Coexpressed gene list for PDX2]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
247641_at
247641_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
247641_at
247641_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
247641_at
247641_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 836175      
Refseq ID (protein) NP_568922.1 


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