[←][→] ath   At5g60940 Gene
functional annotation
Function   Transducin/WD40 repeat-like superfamily protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0031124 [list] [network] mRNA 3'-end processing  (11 genes)  IEA  
GO:0006396 [list] [network] RNA processing  (567 genes)  IEA  
GO CC
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (121 genes)  ISS  
GO:0005737 [list] [network] cytoplasm  (13880 genes)  ISM  
GO MF
KEGG ath03015 [list] [network] mRNA surveillance pathway (119 genes)
Protein NP_200902.1  NP_974972.1 
BLAST NP_200902.1  NP_974972.1 
Orthologous [Ortholog page] LOC4334149 (osa)  LOC11419557 (mtr)  LOC100809908 (gma)  LOC101264599 (sly)  LOC103860555 (bra)  LOC123105058 (tae)  LOC123113357 (tae)  LOC123122868 (tae)  LOC123452288 (hvu) 
Subcellular
localization
wolf
cysk 8,  cyto 1  (predict for NP_200902.1)
cyto 6,  chlo 4  (predict for NP_974972.1)
Subcellular
localization
TargetP
other 7  (predict for NP_200902.1)
chlo 5,  other 3  (predict for NP_974972.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01240 Biosynthesis of cofactors 2
ath03015 mRNA surveillance pathway 2
Genes directly connected with AT5G60940 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
7.2 AT1G72420 NADH:ubiquinone oxidoreductase intermediate-associated protein 30 [detail] 843574
6.0 RECA3 RECA homolog 3 [detail] 820177
6.0 AT5G51140 Pseudouridine synthase family protein [detail] 835188
5.7 AT1G49350 pfkB-like carbohydrate kinase family protein [detail] 841358
5.4 CRT1 compromized recognition of TCV 1 [detail] 829786
Coexpressed
gene list		 [Coexpressed gene list for AT5G60940]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
247609_at
247609_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
247609_at
247609_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
247609_at
247609_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 836215      
Refseq ID (protein) NP_200902.1 
NP_974972.1 


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