ATTED-II : GeneID search result

[←][→] ath At5g63180 Gene

functional annotation

Function

Pectin lyase-like superfamily protein

GO BP

GO:0045490 [list] [network] pectin catabolic process	(78 genes)	IEA
GO:0030154 [list] [network] cell differentiation	(1176 genes)	IEA
GO:0050793 [list] [network] regulation of developmental process	(1250 genes)	IEA
GO:0009416 [list] [network] response to light stimulus	(1981 genes)	IEA

GO CC

GO:0005576 [list] [network] extracellular region	(3154 genes)	ISM
GO:0009536 [list] [network] plastid	(5425 genes)	HDA

GO MF

GO:0030570 [list] [network] pectate lyase activity	(25 genes)	IEA
GO:0016829 [list] [network] lyase activity	(284 genes)	ISS

KEGG

ath00040 [list] [network] Pentose and glucuronate interconversions (108 genes)

Protein

NP_568967.1

BLAST

NP_568967.1

Orthologous

[Ortholog page] 9612 (sly) AT3G07010 (ath) AT3G24230 (ath) AT3G24670 (ath) AT3G27400 (ath) AT3G53190 (ath) PMR6 (ath) AT4G13210 (ath) AT4G13710 (ath) AT4G24780 (ath) AT5G04310 (ath) AT5G48900 (ath) AT1G04680 (ath) AT1G67750 (ath) LOC4335013 (osa) LOC4348800 (osa) LOC7453817 (ppo) LOC7458080 (ppo) LOC7460526 (ppo) LOC7467675 (ppo) LOC7468445 (ppo) LOC7469382 (ppo) LOC7477066 (ppo) LOC7479851 (ppo) LOC7481246 (ppo) LOC7488611 (ppo) LOC7494805 (ppo) LOC11408829 (mtr) LOC11409358 (mtr) LOC11411484 (mtr) LOC11426383 (mtr) LOC18100132 (ppo) LOC25483116 (mtr) LOC25483947 (mtr) LOC25485548 (mtr) LOC25489517 (mtr) LOC25499338 (mtr) LOC100101868 (gma) LOC100775595 (gma) LOC100779940 (gma) LOC100781845 (gma) LOC100782388 (gma) LOC100787082 (gma) LOC100789303 (gma) LOC100790659 (gma) LOC100794814 (gma) LOC100808438 (gma) LOC100809277 (gma) LOC100810380 (gma) LOC100814679 (gma) LOC100815062 (gma) LOC100816256 (gma) LOC101244298 (sly) LOC101252082 (sly) PL (sly) LOC101254639 (sly) LOC101257697 (sly) LOC101260911 (sly) LOC101263458 (sly) LOC101264881 (sly) LOC101264933 (sly) LOC103828610 (bra) LOC103828688 (bra) LOC103829999 (bra) LOC103831011 (bra) LOC103831201 (bra) LOC103833411 (bra) LOC103834896 (bra) LOC103836561 (bra) LOC103837270 (bra) LOC103837461 (bra) LOC103841243 (bra) LOC103841403 (bra) LOC103843635 (bra) LOC103844229 (bra) LOC103847312 (bra) LOC103850282 (bra) LOC103852424 (bra) LOC103854567 (bra) LOC103855563 (bra) LOC103861505 (bra) LOC103862557 (bra) LOC103863605 (bra) LOC103863641 (bra) LOC103870710 (bra) LOC103873738 (bra) LOC103875221 (bra) LOC112323533 (ppo) LOC123043123 (tae) LOC123044722 (tae) LOC123051018 (tae) LOC123119621 (tae) LOC123180958 (tae) LOC123186967 (tae) LOC123430122 (hvu) LOC123431519 (hvu)

Subcellular
localization
wolf

mito 4, chlo 3, pero 1, plas 1, extr 1, cyto_pero 1

(predict for NP_568967.1)

Subcellular
localization
TargetP

mito 5, chlo 4

(predict for NP_568967.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00040	Pentose and glucuronate interconversions	2

Genes directly connected with AT5G63180 on the network
coex z^*	Locus	Function^*	CoexViewer	Entrez Gene ID^*
6.4	AT4G13840	HXXXD-type acyl-transferase family protein	[detail]	827018
6.1	RGF9	root meristem growth factor	[detail]	836598
6.0	EXP3	Barwin-like endoglucanases superfamily protein	[detail]	818341
5.0	AT4G19380	Long-chain fatty alcohol dehydrogenase family protein	[detail]	827679

Coexpressed
gene list

[Coexpressed gene list for AT5G63180]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

247377_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

247377_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

247377_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	836439
Refseq ID (protein)	NP_568967.1

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