ATTED-II

ver. 9.1

last update; Apr. 11. 2017

Samples for Ath.c4-1 subgroup series

Experimental IDs and description

Tissue (237)

TAIR-ID Number of GeneChips Description
ME00237 237 AtGenExpress: Expression Atlas of Arabidopsis Development
Schmid et al. (2005) A gene expression map of Arabidopsis thaliana development.

Abiotic stress (534)

TAIR-ID Number of GeneChips Description
TAIR-ME00325 52 Cold stress time course
TAIR-ME00338 60 Drought stress time course
TAIR-ME00326 52 Genotoxic stress time course
TAIR-ME00339 94 Heat stress time course
TAIR-ME00327 52 Osmotic stress time course
TAIR-ME00340 52 Oxidative stress time course
TAIR-ME00328 52 Salt stress time course
TAIR-ME00329 60 UV-B stress time course
TAIR-ME00330 60 Wounding stress time course
Kilian et al. (2007) The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses.

Biotic stress (200)

TAIR-ID Number of GeneChips Description
ME00331 48 Virulent, avirulent, typeIII-secretion system deficient and nonhost bacteria
ME00332 42 Bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
ME00341 12 Botrytis cinerea infection: Ferrari et al (2007)
ME00342 18 Phytophthora infestans
ME00353 32 Pseudomonas half leaf injection
ME00354 48 Erysiphe orontii infection

Hormone (200)

TAIR-ID Number of GeneChips Description
ME00333 12 ABA
ME00334 12 ACC
ME00335 24 Brassinolide , wild and det2-1
ME00336 12 IAA
ME00337 12 MeJA
ME00343 24 GA3, wild and ga3
ME00344 12 Zeatine
ME00352 26 Brassinosteroid
ME00356 12 Cytokinin, wild and ARR22
ME00357 20 Gibberellic acid inhibitors on seedlings
ME00358 10 Auxin inhibitors on seedlings
ME00359 18 Brassinosteroid inhibitors on seedlings
ME00360 6 Ethylene inhibitors on seedlings
Goda et al. (2008) The AtGenExpress hormone- and chemical-treatment data set: Experimental design, data evaluation, model data analysis, and data access.

Light (48)

TAIR-ID Number of GeneChips Description
ME00345 48 Light treatments
Peschke and Kretsch (2011) Genome-wide analysis of light-dependent transcript accumulation patterns during early stages of Arabidopsis seedling deetiolation.