last update; Oct. 31. 2017
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A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z
Abbr | Description |
---|---|
C | Combat |
CB | Combat & Bagging |
Q | Quantile |
CQ | Combat & Quantile |
QCQ | Quantile, Combat & Quantile |
CQB | Combat & Quantile & Bagging |
MR* | Edge |
---|---|
MR < 5 | Bold edge |
MR < 30 | Normal edge |
MR > 30 | Thin edge |
Prefix | Type |
---|---|
BP | Biological Process |
CC | Cellular Component |
MF | Molecular Function |
Evidence code [www.geneontology.org];
Code | Description |
---|---|
IC | inferred by curator |
IDA | inferred from direct assay |
IEA | inferred from electronic annotation |
IEP | inferred from expression pattern |
IGI | inferred from genetic interation |
IMP | inferred from mutant phenotype |
IPI | inferred from physical interaction |
ISS | inferred from sequence or structural similarity |
NAS | non-traceable author statement |
ND | no biological data available |
TAS | traceable author statemen |
Number | Example | Comments | |
---|---|---|---|
Total loci | 31,128 | At1g01010 ... At5g67640 | Nucleus-encoded genes with 1000-bp upstream sequence accroding to At_upstream_1000_20051108 of TAIR. |
Total loci with Affy. expression data | 22,263 | At1g01010 ... At5g67630 | conversion of probe to locus is done according to MaxPlanck-released expression data. |
Total loci with protein sequence | 26,544 | At1g01010 ... At5g67640 | according to ATH1_pep_20051108 of TAIR. |
Abbr | Name |
---|---|
C | chloroplast |
M | mitochondoria |
S | scretory |
O | others |
Abbr | Name | |
---|---|---|
C | chlo | chloroplast |
E | E.R. | E.R. |
G | golg | golgi body |
K | cysk | cytoskeletal |
L | lyso | lysosome |
M | mito | mitochondria |
N | nucl | nuclear |
P | plas | plasma membrane |
S | extr | extracellular |
V | vacu | vacuole |
X | pero | peroxisome |
Y | cyto | cytoplast |
Abbr | Name | |
---|---|---|
C | chlo | chloroplast |
E | E.R. | E.R. |
G | golg | golgi bod |
K | cysk | cytoskeletal |
L | lyso | lysosome |
M | mito | mitochondria |
N | nucl | nuclear |
P | plas | plasma membrane |
S | extr | extracellular |
V | vacu | vacuole |
X | pero | peroxisome |
Y | cyto | cytoplast |