KEGG 00220 Arginine biosynthesis
[list]

Species ath(Arabidopsis) gma(Soybean) sly(Tomato) osa(Rice) zma(Maize) bra(Field mustard) vvi(Grape) ppo(Poplar) mtr(Medicago)
UMAP
Representative coexpressed gene network LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 16
ath00220 Arginine biosynthesis 15
ath01210 2-Oxocarboxylic acid metabolism 10
ath00250 Alanine, aspartate and glutamate metabolism 10
ath00330 Arginine and proline metabolism 5
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00220 Arginine biosynthesis 29
gma01230 Biosynthesis of amino acids 21
gma00250 Alanine, aspartate and glutamate metabolism 19
gma00910 Nitrogen metabolism 12
gma01210 2-Oxocarboxylic acid metabolism 10
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 12
sly00220 Arginine biosynthesis 10
sly01210 2-Oxocarboxylic acid metabolism 8
sly00250 Alanine, aspartate and glutamate metabolism 7
sly01200 Carbon metabolism 5
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00220 Arginine biosynthesis 16
osa01230 Biosynthesis of amino acids 16
osa01210 2-Oxocarboxylic acid metabolism 12
osa00250 Alanine, aspartate and glutamate metabolism 9
osa00710 Carbon fixation in photosynthetic organisms 5
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 21
zma00220 Arginine biosynthesis 19
zma00250 Alanine, aspartate and glutamate metabolism 13
zma01210 2-Oxocarboxylic acid metabolism 9
zma01200 Carbon metabolism 7
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00220 Arginine biosynthesis 22
bra01230 Biosynthesis of amino acids 20
bra00250 Alanine, aspartate and glutamate metabolism 18
bra00910 Nitrogen metabolism 10
bra01210 2-Oxocarboxylic acid metabolism 10
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00220 Arginine biosynthesis 11
vvi01230 Biosynthesis of amino acids 9
vvi01210 2-Oxocarboxylic acid metabolism 8
vvi01200 Carbon metabolism 6
vvi00250 Alanine, aspartate and glutamate metabolism 5
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00220 Arginine biosynthesis 11
ppo00250 Alanine, aspartate and glutamate metabolism 11
ppo01230 Biosynthesis of amino acids 9
ppo01200 Carbon metabolism 6
ppo01210 2-Oxocarboxylic acid metabolism 6
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00220 Arginine biosynthesis 8
mtr00250 Alanine, aspartate and glutamate metabolism 7
mtr01200 Carbon metabolism 6
mtr01230 Biosynthesis of amino acids 6
mtr00710 Carbon fixation in photosynthetic organisms 3
Gene list in the network
Symbol Function*
AT2G19940 Putative N-acetyl-gamma-glutamyl-phosphate reductase
NAGS1 N-acetyl-l-glutamate synthase 1
ASP1 aspartate aminotransferase 1
AT2G31390 pfkB-like carbohydrate kinase family protein
AT2G37500 arginine biosynthesis protein ArgJ family
GLN1.3 glutamine synthetase 1.3
POP2 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
ARGAH1 arginase
ASP5 aspartate aminotransferase 5
AGD2 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
GDH2 glutamate dehydrogenase 2
ASP3 aspartate aminotransferase 3
GLN1;4 glutamine synthetase 1;4
ASP2 aspartate aminotransferase 2
GSR 1 hypothetical protein
CLPX CLP protease regulatory subunit X
HDH histidinol dehydrogenase
AlaAT1 alanine aminotransferas
AT1G44820 Peptidase M20/M25/M40 family protein
WIN1 HOPW1-1-interacting 1
Symbol Function*
GS1alpha cytosolic glutamine synthetase alpha
GDH2 glutamate dehydrogenase 2
LOC547792 aspartate aminotransferase
GS glutamine synthetase nodule isozyme
GS-2 glutamine synthetase precursor
GS glutamate--ammonia ligase
ALAAT1 alanine aminotransferase 1
LOC100499845 argininosuccinate synthase, chloroplastic
LOC100775818 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10
LOC100775828 ornithine carbamoyltransferase, chloroplastic
LOC100776235 alanine aminotransferase 2
LOC100777869 glutamate dehydrogenase 1
LOC100780093 acetylglutamate kinase, chloroplastic
LOC100780873 glutamine synthetase leaf isozyme, chloroplastic
LOC100781340 NO-associated protein 1, chloroplastic/mitochondrial
LOC100785606 enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic
LOC100786807 small nuclear ribonucleoprotein-associated protein B
LOC100788009 NADP-specific glutamate dehydrogenase
LOC100788347 probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic
LOC100793231 glutamate dehydrogenase 2
LOC100795030 pentatricopeptide repeat-containing protein At3g14330
LOC100795886 argininosuccinate synthase, chloroplastic-like
LOC100796780 ornithine carbamoyltransferase, chloroplastic
LOC100798614 NO-associated protein 1, chloroplastic/mitochondrial
LOC100801527 probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic
LOC100801991 glutamate dehydrogenase 1
LOC100809032 NADP-specific glutamate dehydrogenase
LOC100809547 arginine biosynthesis bifunctional protein ArgJ, chloroplastic
LOC100809669 arginine biosynthesis bifunctional protein ArgJ, chloroplastic
LOC100811514 aspartate aminotransferase P2, mitochondrial
LOC100814183 acetylglutamate kinase, chloroplastic
LOC100816038 argininosuccinate synthase, chloroplastic
LOC100817922 glutamine synthetase PR-2
Symbol Function*
LOC101244012 aspartate aminotransferase, cytoplasmic
LOC101244420 glutamate--tRNA ligase, cytoplasmic
LOC101246035 alanine aminotransferase 2
LOC101246328 alanine aminotransferase 2-like
LOC101252029 probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic
LOC101252192 LL-diaminopimelate aminotransferase, chloroplastic
AS argininosuccinate lyase
LOC101260239 alanine aminotransferase 2
LOC101261642 aspartate aminotransferase, chloroplastic
LOC101263138 serine hydroxymethyltransferase 3, chloroplastic
LOC101267833 acetylornithine deacetylase-like
ASS argininosuccinate synthase
NAOD N2-acetylornithine deacetylase
Symbol Function*
LOC4325621 aspartate aminotransferase, cytoplasmic-like
LOC4330380 acetylornithine deacetylase
LOC4330987 nudix hydrolase 3
LOC4331017 aspartate aminotransferase, chloroplastic
LOC4332434 arginine biosynthesis bifunctional protein ArgJ, chloroplastic-like
LOC4332596 argininosuccinate lyase, chloroplastic
LOC4333458 probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic
LOC4337272 glutamine synthetase, chloroplastic-like
LOC4337697 acetylornithine aminotransferase, mitochondrial
LOC4340457 aminoacylase-1
LOC4341252 aspartate aminotransferase, mitochondrial
LOC4342210 glutamate--glyoxylate aminotransferase 2
LOC4343164 acetylornithine aminotransferase, mitochondrial
LOC4343916 alanine aminotransferase 2
LOC4345338 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha
LOC4346012 aminoacylase-1
LOC4348524 alanine aminotransferase 2
LOC4351847 argininosuccinate synthase, chloroplastic
LOC9269231 ornithine carbamoyltransferase, chloroplastic
LOC9271427 ACT domain-containing protein DS12, chloroplastic
Symbol Function*
LOC542214 glutamine synthetase 4
LOC542215 glutamine synthetase 3
LOC542401 glutamine synthetase 5
LOC542520 glutamine synthetase 6
LOC542746 glutamine synthetase 1
LOC100191335 ferric-chelate reductase (NADH)1
LOC100191877 N-acetyl-gamma-glutamyl-phosphate reductase
LOC100191977 argininosuccinate lyase
LOC100193705 Alanine aminotransferase 2 mitochondrial
LOC100194039 4-hydroxy-tetrahydrodipicolinate reductase 2 chloroplastic
LOC100272721 uncharacterized LOC100272721
LOC100273311 uncharacterized LOC100273311
LOC100274106 argininosuccinate synthase
LOC100274119 aspartate aminotransferase
LOC100274332 uncharacterized LOC100274332
LOC100280306 uncharacterized LOC100280306
LOC100280624 dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex
LOC100282625 aspartate aminotransferase
LOC100282849 uncharacterized LOC100282849
LOC100283456 uncharacterized LOC100283456
LOC100283576 translocon Tic40
LOC100284885 ornithine carbamoyltransferase
LOC100383335 Arginine biosynthesis bifunctional protein ArgJ, chloroplastic Glutamate N-acetyltransferase Amino-acid acetyltransferase Arginine biosynthesis bifunctional protein ArgJ alpha chain Arginine biosynthesis bifunctional protein ArgJ beta chain
LOC100384793 alanine aminotransferase 2
LOC103635817 phosphoglycerate kinase, chloroplastic
Symbol Function*
LOC103830654 ornithine carbamoyltransferase, chloroplastic
LOC103832828 NADP-specific glutamate dehydrogenase-like
LOC103834462 LL-diaminopimelate aminotransferase, chloroplastic
LOC103835672 glutamate--glyoxylate aminotransferase 1
LOC103835961 alanine aminotransferase 1, mitochondrial-like
LOC103838075 probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic
LOC103839002 glutamine synthetase cytosolic isozyme 1-3-like
LOC103840779 glutamate--glyoxylate aminotransferase 1-like
LOC103841661 acetylglutamate kinase, chloroplastic
LOC103846320 glutamine synthetase cytosolic isozyme 1-4
LOC103847058 glutamate dehydrogenase 2
LOC103850656 glutamate dehydrogenase 2-like
LOC103851053 glutamine synthetase cytosolic isozyme 1-4-like
LOC103853233 acetylornithine aminotransferase, chloroplastic/mitochondrial-like
LOC103853240 3-isopropylmalate dehydrogenase, chloroplastic
LOC103855915 aspartate aminotransferase 3, chloroplastic
LOC103856372 adenylosuccinate lyase
LOC103857473 3-ketoacyl-CoA thiolase 2, peroxisomal-like
LOC103858497 arginase 1, mitochondrial
LOC103859729 glutamine synthetase cytosolic isozyme 1-3-like
LOC103862653 argininosuccinate synthase, chloroplastic-like
LOC103864545 myb family transcription factor EFM
LOC103865090 aspartate aminotransferase, mitochondrial
LOC103869647 glutamine synthetase cytosolic isozyme 1-3-like
LOC103869648 glutamine synthetase cytosolic isozyme 1-3-like
LOC103870742 alkaline/neutral invertase C, mitochondrial
LOC103871264 NADP-specific glutamate dehydrogenase
LOC103872517 alanine aminotransferase 1, mitochondrial-like
Symbol Function*
LOC100241156 alanine aminotransferase 2
LOC100245998 fructose-bisphosphate aldolase cytoplasmic isozyme-like
LOC100253362 arginine biosynthesis bifunctional protein ArgJ, chloroplastic-like
LOC100255475 probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic
LOC100256163 aspartate aminotransferase, cytoplasmic
GDH glutamate dehydrogenase
LOC100259394 probable amino-acid acetyltransferase NAGS1, chloroplastic
LOC100260562 aminoacylase-1
LOC100263023 urease
LOC100263048 glutamate dehydrogenase
LOC100263283 puromycin-sensitive aminopeptidase
LOC100267386 aldehyde dehydrogenase family 2 member B4, mitochondrial
LOC100268005 aspartate aminotransferase, cytoplasmic
LOC100854039 probable amino-acid acetyltransferase NAGS1, chloroplastic
Symbol Function*
LOC7458772 aspartate aminotransferase, cytoplasmic
LOC7460760 glutamate--glyoxylate aminotransferase 2
LOC7461992 carbamoyl-phosphate synthase small chain, chloroplastic
LOC7465406 aspartate aminotransferase, chloroplastic
LOC7467203 argininosuccinate lyase, chloroplastic
LOC7468079 aspartate aminotransferase, mitochondrial
LOC7469050 glutamate--glyoxylate aminotransferase 2
LOC7469108 glutamine synthetase leaf isozyme, chloroplastic
LOC7469881 glutamate dehydrogenase 1
LOC7470229 magnesium-chelatase subunit ChlI, chloroplastic
LOC7472319 pyruvate decarboxylase 1
LOC7480435 acetylornithine aminotransferase, mitochondrial
LOC7482352 glutamate dehydrogenase 1
LOC7491622 argininosuccinate synthase, chloroplastic
Symbol Function*
LOC11406332 calcium uniporter protein 2, mitochondrial
LOC11408458 aspartate aminotransferase, mitochondrial
LOC11412276 transmembrane protein 205
LOC11414500 probable glutamate dehydrogenase 3
LOC11419138 argininosuccinate synthase, chloroplastic
LOC11423209 argininosuccinate lyase, chloroplastic
LOC11434432 glucose-6-phosphate isomerase, cytosolic 1
LOC11444017 alanine aminotransferase 2
LOC25482166 ornithine carbamoyltransferase, chloroplastic
LOC25485126 stem-specific protein TSJT1
LOC25490097 aspartate aminotransferase 1
LOC25493591 glutamate dehydrogenase 2


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