KEGG 00240 Pyrimidine metabolism
[list]

Species ath(Arabidopsis) gma(Soybean) sly(Tomato) osa(Rice) zma(Maize) bra(Field mustard) vvi(Grape) ppo(Poplar) mtr(Medicago)
UMAP
Representative coexpressed gene network LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00240 Pyrimidine metabolism 17
ath00230 Purine metabolism 6
ath00410 beta-Alanine metabolism 3
ath00770 Pantothenate and CoA biosynthesis 3
ath00480 Glutathione metabolism 2
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00240 Pyrimidine metabolism 63
gma00230 Purine metabolism 18
gma04016 MAPK signaling pathway - plant 6
gma00480 Glutathione metabolism 6
gma03030 DNA replication 6
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00240 Pyrimidine metabolism 14
sly00230 Purine metabolism 4
sly00410 beta-Alanine metabolism 2
sly00770 Pantothenate and CoA biosynthesis 2
sly00250 Alanine, aspartate and glutamate metabolism 2
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00240 Pyrimidine metabolism 17
osa00230 Purine metabolism 5
osa00250 Alanine, aspartate and glutamate metabolism 3
osa00480 Glutathione metabolism 3
osa01230 Biosynthesis of amino acids 2
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00240 Pyrimidine metabolism 35
zma00230 Purine metabolism 10
zma00250 Alanine, aspartate and glutamate metabolism 6
zma00670 One carbon pool by folate 2
zma00790 Folate biosynthesis 2
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00240 Pyrimidine metabolism 32
bra00230 Purine metabolism 9
bra00480 Glutathione metabolism 4
bra00250 Alanine, aspartate and glutamate metabolism 4
bra00410 beta-Alanine metabolism 2
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00240 Pyrimidine metabolism 9
vvi00230 Purine metabolism 2
vvi00760 Nicotinate and nicotinamide metabolism 2
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00240 Pyrimidine metabolism 13
ppo00230 Purine metabolism 5
ppo00480 Glutathione metabolism 3
ppo00410 beta-Alanine metabolism 2
ppo00770 Pantothenate and CoA biosynthesis 2
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00240 Pyrimidine metabolism 23
mtr00230 Purine metabolism 6
mtr00250 Alanine, aspartate and glutamate metabolism 4
mtr00480 Glutathione metabolism 4
mtr00410 beta-Alanine metabolism 3
Gene list in the network
Symbol Function*
RNR1 ribonucleotide reductase 1
AT2G44040 Dihydrodipicolinate reductase, bacterial/plant
APY1 apyrase 1
TK1a Thymidine kinase
emb2742 CTP synthase family protein
AT3G14390 Pyridoxal-dependent decarboxylase family protein
PYD1 pyrimidine 1
PYRB PYRIMIDINE B
TSO2 Ferritin/ribonucleotide reductase-like family protein
CARA carbamoyl phosphate synthetase A
DUT1 DUTP-PYROPHOSPHATASE-LIKE 1
AT3G48540 Cytidine/deoxycytidylate deaminase family protein
UPP uracil phosphoribosyltransferase
NDPK3 nucleoside diphosphate kinase 3
PYR4 pyrimidin 4
PYD2 pyrimidine 2
APY2 apyrase 2
NDPK2 nucleoside diphosphate kinase 2
BETA-UP beta-ureidopropionase
PCNA1 proliferating cellular nuclear antigen 1
Symbol Function*
LOC547709 nucleoside diphosphate kinase
DHFR-TS bifunctional dihydrofolate reductase-thymidylate synthase
LOC547870 nucleoside diphosphate kinase
LOC547948 ribonucleotide reductase large subunit B
LOC547993 aspartic proteinase
LOC548020 ribonucleoside-diphosphate reductase large subunit
LOC548079 proliferating cell nuclear antigen
LOC100306197 uncharacterized LOC100306197
LOC100306603 UMP/CMP kinase family protein
LOC100306684 uncharacterized LOC100306684
LOC100499878 elongation factor 1-delta 2-like
LOC100500111 UMP-CMP kinase family protein
LOC100500185 CTP synthase
LOC100500478 nucleoside diphosphate kinase 2, chloroplastic
LOC100527141 NDPk domain-containing protein
LOC100527475 uncharacterized LOC100527475
LOC100527893 uridine kinase-like protein
LOC100777091 replication protein A 70 kDa DNA-binding subunit B
LOC100777346 cell division control protein 45 homolog
LOC100777904 uridine kinase-like protein 3
LOC100778080 CTP synthase
LOC100779210 acetolactate synthase small subunit 2, chloroplastic-like
LOC100779772 5'-nucleotidase surE-like
LOC100779885 ribonucleoside-diphosphate reductase small chain
LOC100780005 uridine kinase-like protein 1, chloroplastic
LOC100780748 probable apyrase 6
LOC100781286 uridine-cytidine kinase C
LOC100781341 thymidine kinase a
LOC100781590 dihydropyrimidinase-like
LOC100782126 deoxyuridine 5'-triphosphate nucleotidohydrolase
LOC100782586 DNA replication licensing factor MCM4
LOC100783159 dihydroorotate dehydrogenase (quinone), mitochondrial
LOC100784363 acyl carrier protein 1, chloroplastic-like
LOC100786073 apyrase 2
LOC100786137 uridine kinase-like protein 1, chloroplastic
LOC100786311 bifunctional dihydrofolate reductase-thymidylate synthase
LOC100786329 bifunctional dihydrofolate reductase-thymidylate synthase-like protein
LOC100786431 nudix hydrolase 20, chloroplastic-like
LOC100787097 aspartate carbamoyltransferase 1, chloroplastic
LOC100787563 uridine nucleosidase 1-like
LOC100788357 elongation factor 2
LOC100788470 carbamoyl-phosphate synthase small chain-like
LOC100788658 bifunctional dihydrofolate reductase-thymidylate synthase
LOC100788720 CTP synthase
LOC100790224 ribonucleoside-diphosphate reductase small chain
LOC100790833 5'-nucleotidase SurE
LOC100791639 ribonucleoside-diphosphate reductase large subunit
LOC100792003 deoxycytidylate deaminase
LOC100792258 uridine kinase-like protein 3
LOC100793465 CTP synthase
LOC100794055 deoxyuridine 5'-triphosphate nucleotidohydrolase
LOC100795266 pseudouridine-5'-phosphate glycosidase
LOC100797542 uridine-cytidine kinase C
LOC100798205 uridine kinase-like protein 3
LOC100799980 CTP synthase
LOC100800054 dihydroorotate dehydrogenase (quinone), mitochondrial
LOC100802353 dihydropyrimidinase
LOC100802354 aspartate carbamoyltransferase 1, chloroplastic
LOC100802512 replication protein A 32 kDa subunit A
LOC100804389 dihydroorotase, mitochondrial
LOC100804632 NAD-dependent dihydropyrimidine dehydrogenase subunit PreA-like
LOC100805857 CTP synthase
LOC100806168 carbamoyl-phosphate synthase small chain, chloroplastic
LOC100807008 uridine 5'-monophosphate synthase-like
LOC100807287 probable apyrase 6
LOC100811625 apyrase 2
LOC100811753 nucleoside diphosphate kinase 2, chloroplastic-like
LOC100816167 CTP synthase
LOC100816855 elongation factor 1-beta 2
LOC100817651 proliferating cell nuclear antigen
LOC100818437 thymidine kinase a
LOC100818908 uridine nucleosidase 1
LOC100818990 dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic
LOC100819867 carbamoyl-phosphate synthase large chain, chloroplastic
LOC100820622 ribonucleoside-diphosphate reductase small chain
LOC106798062 dCTP pyrophosphatase 1
LOC112998126 CTP synthase-like
Symbol Function*
LOC543715 TK1-like deoxyribonucleoside kinase
PYD1A putative dehydrogenase
LOC544064 nucleolin-like
pyrB aspartate carbamoyltransferase
P18 deoxyuridine triphosphatase
LOC101244545 CTP synthase
LOC101247459 CTP synthase
LOC101249065 ribonucleoside-diphosphate reductase large subunit-like
LOC101250906 thymidylate kinase
LOC101253117 ruBisCO large subunit-binding protein subunit beta, chloroplastic
LOC101255870 replication protein A 70 kDa DNA-binding subunit B
LOC101256925 deoxyuridine 5'-triphosphate nucleotidohydrolase-like
LOC101258292 DNA primase small subunit
LOC101259343 carbamoyl-phosphate synthase large chain, chloroplastic
LOC101261528 5'-nucleotidase SurE-like
LOC101261826 5'-nucleotidase SurE
LOC101263997 ribonucleoside-diphosphate reductase large subunit
LOC101264414 WD repeat and HMG-box DNA-binding protein 1
LOC101267567 beta-ureidopropionase
Symbol Function*
LOC4325739 uridine 5'-monophosphate synthase-like
LOC4326346 carbamoyl-phosphate synthase large chain, chloroplastic-like
LOC4328991 uridine kinase-like protein 3
LOC4329914 CMP-sialic acid transporter 5-like
LOC4330181 GTP-binding protein YPTM2
LOC4330474 carbamoyl-phosphate synthase small chain, chloroplastic-like
LOC4330530 uncharacterized LOC4330530
LOC4330657 dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic
LOC4330910 UMP-CMP kinase 4-like
LOC4331376 thymidine kinase-like
LOC4332478 probable sugar phosphate/phosphate translocator At3g11320
LOC4332563 probable LL-diaminopimelate aminotransferase, chloroplastic
LOC4333582 7-methylguanosine phosphate-specific 5'-nucleotidase A
LOC4333679 deoxyuridine 5'-triphosphate nucleotidohydrolase-like
LOC4337139 probable galacturonosyltransferase 10
LOC4339981 ribonucleoside-diphosphate reductase small chain
LOC4340258 ribonucleoside-diphosphate reductase large subunit
LOC4342620 bifunctional phosphatase IMPL2, chloroplastic
LOC4342824 guanosine deaminase
LOC4343960 UMP-CMP kinase 3-like
LOC4343985 origin of replication complex subunit 6
LOC4344315 probable apyrase 2
LOC4345071 aspartate carbamoyltransferase, chloroplastic-like
LOC4346302 probable uridine nucleosidase 1
LOC4347727 WD-40 repeat-containing protein MSI3
LOC9266846 ribonucleoside-diphosphate reductase small chain
LOC9271078 putative bifunctional dihydrofolate reductase-thymidylate synthase
LOC9271701 pentatricopeptide repeat-containing protein At3g58590
Symbol Function*
LOC541707 bifunctional dihydrofolate reductase-thymidylate synthase
LOC542357 proliferating cell nuclear antigen 2
LOC100192012 uncharacterized LOC100192012
LOC100193253 ATP phosphoribosyltransferase 2 chloroplastic
LOC100193467 uncharacterized LOC100193467
LOC100193828 uncharacterized LOC100193828
LOC100193891 ustilago maydis induced8
LOC100194241 CTP synthase family protein
LOC100217180 Amino acid kinase family protein
LOC100272244 putative apyrase family protein
LOC100272767 Dihydropyrimidinase
LOC100273224 uncharacterized LOC100273224
LOC100273421 uncharacterized LOC100273421
LOC100273583 Putative nucleoside phosphatase GDA1/CD39 family protein
LOC100273931 carbamoyl-phosphate synthase small chain
LOC100274407 uncharacterized LOC100274407
LOC100278007 uncharacterized LOC100278007
LOC100280053 cyclin superfamily protein, putative
LOC100280500 CTP synthase
LOC100280755 acid phosphatase
LOC100281211 DNA-binding protein
LOC100281709 CTP synthase
LOC100282335 uncharacterized LOC100282335
LOC100282373 uncharacterized LOC100282373
LOC100282453 uncharacterized LOC100282453
LOC100282482 aspartate carbamoyltransferase 1
LOC100283449 beta alanine synthase 1
LOC100283650 uncharacterized LOC100283650
LOC100283855 nucleoside diphosphate kinase 4
LOC100284475 ribonucleoside-diphosphate reductase small chain
LOC100284489 uncharacterized LOC100284489
LOC100284704 acid phosphatase
LOC100285653 uncharacterized LOC100285653
LOC100285657 Putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic
LOC100285892 deoxycytidylate deaminase
LOC100286018 uncharacterized LOC100286018
LOC100286291 uncharacterized LOC100286291
LOC100382896 uncharacterized LOC100382896
LOC100502188 DEAD-box ATP-dependent RNA helicase pseudogene
LOC103635893 cullin-1-like
LOC103636016 carbamoyl-phosphate synthase large chain, chloroplastic
LOC103643771 deoxyuridine 5'-triphosphate nucleotidohydrolase
LOC103647945 probable apyrase 2
LOC103651512 carbamoyl-phosphate synthase large chain, chloroplastic
LOC103651612 CTP synthase
LOC109939200 ATP synthase subunit d, mitochondrial
Symbol Function*
LOC103827727 pentatricopeptide repeat-containing protein At5g46580, chloroplastic
LOC103827773 ribonucleoside-diphosphate reductase large subunit
LOC103829174 uridine-cytidine kinase C-like
LOC103829953 uracil phosphoribosyltransferase, chloroplastic
LOC103831356 carbamoyl-phosphate synthase small chain, chloroplastic-like
LOC103835128 ribonucleoside-diphosphate reductase large subunit
LOC103835475 uridine-cytidine kinase C
LOC103835761 UDP-galactose transporter 2-like
LOC103836050 dynamin-related protein 1C-like
LOC103837127 UMP-CMP kinase 3-like
LOC103840297 CTP synthase
LOC103840449 carbamoyl-phosphate synthase large chain, chloroplastic
LOC103841311 uracil phosphoribosyltransferase, chloroplastic
LOC103845039 uridine kinase-like protein 4
LOC103845327 CTP synthase
LOC103845846 apyrase 2
LOC103846659 dihydropyrimidinase
LOC103846970 2-Cys peroxiredoxin BAS1-like, chloroplastic
LOC103850139 UDP-glucose 6-dehydrogenase 4
LOC103852593 carbamoyl-phosphate synthase small chain, chloroplastic
LOC103852871 uridine-cytidine kinase C
LOC103854270 ribonucleoside-diphosphate reductase small chain C
LOC103854389 prohibitin-1, mitochondrial
LOC103854712 UMP-CMP kinase 3-like
LOC103856393 uncharacterized LOC103856393
LOC103856882 apyrase 2-like
LOC103858581 nephrocystin-3
LOC103858728 elongation factor Tu, mitochondrial
LOC103859763 uridylate kinase-like
LOC103861195 CTP synthase-like
LOC103862264 AP-4 complex subunit mu
LOC103865432 dihydroorotate dehydrogenase (quinone), mitochondrial
LOC103865624 phosphoribosylaminoimidazole carboxylase, chloroplastic
LOC103868370 ribosome-binding ATPase YchF
LOC103869333 aspartate carbamoyltransferase, chloroplastic
LOC103869536 uridylate kinase
LOC103870238 CTP synthase
LOC103871402 polyadenylate-binding protein 8
LOC103871761 phosphoribosylamine--glycine ligase, chloroplastic
LOC103873282 deoxyuridine 5'-triphosphate nucleotidohydrolase
LOC103873747 nucleoside diphosphate kinase II, chloroplastic-like
LOC103873861 beta-ureidopropionase
LOC103874200 dihydroorotate dehydrogenase (quinone), mitochondrial
LOC103874418 uncharacterized LOC103874418
LOC103874463 UMP-CMP kinase 3
LOC103875249 ribonucleoside-diphosphate reductase small chain C
LOC108870772 uridine-cytidine kinase C-like
Symbol Function*
LOC100242070 deoxyuridine 5'-triphosphate nucleotidohydrolase
LOC100244506 ribose-phosphate pyrophosphokinase 1
LOC100245780 5'-nucleotidase SurE-like
LOC100248466 proliferating cell nuclear antigen-like
LOC100248481 CTP synthase
LOC100249622 CTP synthase 1
LOC100249986 dihydropyrimidinase
LOC100253805 methylcrotonoyl-CoA carboxylase beta chain, mitochondrial
LOC100257790 uridine kinase-like protein 1, chloroplastic
LOC100266594 uridine nucleosidase 1
LOC100267231 E3 ubiquitin-protein ligase SINAT2
LOC100852993 thymidine kinase
LOC104881658 uridine kinase-like protein 1, chloroplastic
Symbol Function*
LOC7454881 dihydropyrimidinase
LOC7456349 DNA replication licensing factor MCM4
LOC7457154 ribonucleoside-diphosphate reductase large subunit
LOC7458262 thymidine kinase a
LOC7461992 carbamoyl-phosphate synthase small chain, chloroplastic
LOC7467583 UDP-glucuronic acid decarboxylase 1
LOC7469236 ribonucleoside-diphosphate reductase large subunit
LOC7469858 apyrase 2
LOC7477774 CTP synthase
LOC7480110 dihydropyrimidinase
LOC7482475 structural maintenance of chromosomes protein 4
LOC7486350 ribonucleoside-diphosphate reductase large subunit
LOC7488073 E3 ubiquitin-protein ligase RHF2A
LOC7488587 dCTP pyrophosphatase 1
LOC7489644 apyrase 2
LOC7491255 DNA replication licensing factor MCM7
LOC7491622 argininosuccinate synthase, chloroplastic
LOC7495226 CTP synthase
LOC7497562 CTP synthase
Symbol Function*
LOC11405787 UMP-CMP kinase
LOC11409501 deoxycytidylate deaminase
LOC11411828 beta-ureidopropionase
LOC11415656 branched-chain-amino-acid aminotransferase-like protein 1
LOC11418051 carbamoyl-phosphate synthase large chain, chloroplastic
LOC11418607 DNA repair protein RAD51 homolog
LOC11421464 dihydropyrimidinase
LOC11423868 CTP synthase
LOC11424303 pre-mRNA-processing ATP-dependent RNA helicase prp5
LOC11424976 carbamoyl-phosphate synthase small chain, chloroplastic
LOC11425503 UMP-CMP kinase 3
LOC11426800 aspartate carbamoyltransferase 1, chloroplastic
LOC11427949 sister chromatid cohesion 1 protein 3
LOC11430218 glycerol kinase
LOC11430548 acyl-CoA-binding domain-containing protein 4
LOC11433705 uridine kinase-like protein 4
LOC11434280 dihydropyrimidinase
LOC11434767 uridine nucleosidase 1
LOC11436557 thymidine kinase a
LOC11436689 BTB/POZ domain-containing protein At2g30600
LOC11438405 ribonucleoside-diphosphate reductase large subunit
LOC11440331 26S proteasome non-ATPase regulatory subunit 14 homolog
LOC11440429 adenylosuccinate synthetase 2, chloroplastic
LOC11442224 transmembrane 9 superfamily member 8
LOC11443103 apyrase 2
LOC11444287 CTP synthase
LOC11444865 uridine kinase-like protein 4
LOC25480771 ribonucleoside-diphosphate reductase small chain
LOC25480783 thymidylate kinase
LOC25483253 ribonucleoside-diphosphate reductase small chain
LOC25487661 uncharacterized LOC25487661
LOC25489181 deoxyuridine 5'-triphosphate nucleotidohydrolase
LOC25490187 DUF21 domain-containing protein At1g47330
LOC25491555 uracil phosphoribosyltransferase
LOC25493890 replication protein A 70 kDa DNA-binding subunit B
LOC25502430 CTP synthase
LOC25502502 probable protein phosphatase 2C 39
LOC25502786 ribonucleoside-diphosphate reductase small chain


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