KEGG 00300 Lysine biosynthesis
[list]

Species ath(Arabidopsis) gma(Soybean) sly(Tomato) osa(Rice) zma(Maize) bra(Field mustard) vvi(Grape) ppo(Poplar) mtr(Medicago)
UMAP
Representative coexpressed gene network LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 12
ath00300 Lysine biosynthesis 9
ath00261 Monobactam biosynthesis 5
ath00260 Glycine, serine and threonine metabolism 4
ath00270 Cysteine and methionine metabolism 3
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 19
gma00300 Lysine biosynthesis 16
gma00261 Monobactam biosynthesis 10
gma00260 Glycine, serine and threonine metabolism 7
gma00270 Cysteine and methionine metabolism 6
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00300 Lysine biosynthesis 2
sly01230 Biosynthesis of amino acids 2
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 12
osa00300 Lysine biosynthesis 9
osa00261 Monobactam biosynthesis 6
osa01210 2-Oxocarboxylic acid metabolism 4
osa00260 Glycine, serine and threonine metabolism 4
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 11
zma00300 Lysine biosynthesis 10
zma00261 Monobactam biosynthesis 5
zma00260 Glycine, serine and threonine metabolism 4
zma00270 Cysteine and methionine metabolism 4
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 10
bra00300 Lysine biosynthesis 8
bra01210 2-Oxocarboxylic acid metabolism 4
bra00261 Monobactam biosynthesis 4
bra00290 Valine, leucine and isoleucine biosynthesis 2
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01230 Biosynthesis of amino acids 5
vvi00300 Lysine biosynthesis 4
vvi00260 Glycine, serine and threonine metabolism 2
vvi00261 Monobactam biosynthesis 2
vvi00270 Cysteine and methionine metabolism 2
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00300 Lysine biosynthesis 3
ppo01230 Biosynthesis of amino acids 3
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00300 Lysine biosynthesis 4
mtr01230 Biosynthesis of amino acids 4
mtr00261 Monobactam biosynthesis 3
Gene list in the network
Symbol Function*
AT2G44040 Dihydrodipicolinate reductase, bacterial/plant
OMR1 L-O-methylthreonine resistant 1
AT3G14390 Pyridoxal-dependent decarboxylase family protein
AT3G53580 diaminopimelate epimerase family protein
ADSS adenylosuccinate synthase
DHDPS1 dihydrodipicolinate synthase 1
AK-HSDH II aspartate kinase-homoserine dehydrogenase ii
AT-HF HIS HF
AGD2 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
AT5G11880 Pyridoxal-dependent decarboxylase family protein
AK-LYS1 aspartate kinase 1
AT1G14810 semialdehyde dehydrogenase family protein
IMD2 isopropylmalate dehydrogenase 2
Symbol Function*
LOC547546 precursor monofunctional aspartokinase
AK-HSDH aspartokinase-homoserine dehydrogenase
DHPS1 dihydrodipicolinate synthase
LOC100784731 diaminopimelate epimerase, chloroplastic
LOC100785606 enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic
LOC100786832 diaminopimelate decarboxylase 2, chloroplastic-like
LOC100788930 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic
LOC100792482 aspartokinase 1, chloroplastic
LOC100801405 LL-diaminopimelate aminotransferase, chloroplastic
GLYI-1 putative lactoylglutathione lyase
LOC100803204 aspartokinase 1, chloroplastic
LOC100805860 aspartokinase 2, chloroplastic
LOC100807528 diaminopimelate epimerase, chloroplastic-like
LOC100807796 LL-diaminopimelate aminotransferase, chloroplastic
LOC100807997 dihydrodipicolinate reductase 2, chloroplastic-like
LOC100809499 diaminopimelate decarboxylase 2, chloroplastic-like
LOC100810468 3-isopropylmalate dehydrogenase 2, chloroplastic
LOC100812202 bifunctional aspartokinase/homoserine dehydrogenase, chloroplastic
LOC100812763 ketol-acid reductoisomerase, chloroplastic-like
LOC100817195 omega-amidase, chloroplastic
LOC100819889 4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic
LOC100820155 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Symbol Function*
LOC101249215 diaminopimelate decarboxylase 1, chloroplastic
LOC101253321 4-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic-like
LOC101265372 phosphoribosylamine--glycine ligase
Symbol Function*
LOC4329224 probable 4-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic
LOC4329234 probable diaminopimelate decarboxylase, chloroplastic
LOC4332563 probable LL-diaminopimelate aminotransferase, chloroplastic
LOC4333613 3-isopropylmalate dehydrogenase 2, chloroplastic
LOC4334188 aspartate-semialdehyde dehydrogenase
LOC4334794 aspartokinase 1, chloroplastic
LOC4335317 4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic
LOC4338324 lactoylglutathione lyase
LOC4345328 bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic
LOC4346318 dihydroxy-acid dehydratase, chloroplastic
LOC4346642 bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic
LOC4352558 diaminopimelate epimerase, chloroplastic-like
LOC9269231 ornithine carbamoyltransferase, chloroplastic
Symbol Function*
LOC542249 uncharacterized LOC542249
LOC542708 aspartate kinase homoserine dehydrogenase 2
LOC100191234 Diaminopimelate epimerase chloroplastic
LOC100191334 aspartate-semialdehyde dehydrogenase
LOC100192829 Enoyl-[acyl-carrier-protein] reductase [NADH] chloroplastic
LOC100194039 4-hydroxy-tetrahydrodipicolinate reductase 2 chloroplastic
LOC100217223 Diaminopimelate decarboxylase 2 chloroplastic
LOC100273126 diaminopimelate decarboxylase
LOC100273435 Diaminopimelate epimerase chloroplastic
LOC100280067 uncharacterized LOC100280067
LOC100283445 transaminase/ transferase, transferring nitrogenous groups
LOC100283576 translocon Tic40
LOC100383335 Arginine biosynthesis bifunctional protein ArgJ, chloroplastic Glutamate N-acetyltransferase Amino-acid acetyltransferase Arginine biosynthesis bifunctional protein ArgJ alpha chain Arginine biosynthesis bifunctional protein ArgJ beta chain
LOC103625778 probable DNA gyrase subunit A, chloroplastic/mitochondrial
Symbol Function*
LOC103828655 dihydroxy-acid dehydratase, chloroplastic
LOC103829942 diaminopimelate epimerase, chloroplastic-like
LOC103830170 ketol-acid reductoisomerase, chloroplastic
LOC103834462 LL-diaminopimelate aminotransferase, chloroplastic
LOC103836051 aspartate-semialdehyde dehydrogenase-like
LOC103846688 diaminopimelate decarboxylase 2, chloroplastic
LOC103855942 diaminopimelate decarboxylase 2, chloroplastic-like
LOC103858112 4-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic
LOC103866117 4-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic
LOC103872275 aspartate-semialdehyde dehydrogenase
Symbol Function*
LOC100244650 LL-diaminopimelate aminotransferase, chloroplastic
LOC100245641 aspartate-semialdehyde dehydrogenase
LOC100247076 diaminopimelate decarboxylase 2, chloroplastic
LOC100256118 ATP phosphoribosyltransferase 2, chloroplastic
LOC100258602 bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic
LOC100259973 mitochondrial-processing peptidase subunit alpha
Symbol Function*
LOC7455251 bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic
LOC7458024 protease Do-like 9
LOC7469666 LL-diaminopimelate aminotransferase, chloroplastic
LOC7470003 diaminopimelate decarboxylase 2, chloroplastic
LOC7482451 mitochondrial outer membrane protein porin of 34 kDa
Symbol Function*
LOC11413449 stearoyl-[acyl-carrier-protein] 9-desaturase, chloroplastic
LOC11415757 aspartate-semialdehyde dehydrogenase
LOC11416415 LL-diaminopimelate aminotransferase, chloroplastic
LOC25501006 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic
LOC25501008 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic


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